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Database: UniProt
Entry: C5YJ88_SORBI
LinkDB: C5YJ88_SORBI
Original site: C5YJ88_SORBI 
ID   C5YJ88_SORBI            Unreviewed;       465 AA.
AC   C5YJ88;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   01-SEP-2009, sequence version 1.
DT   08-NOV-2023, entry version 65.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=SORBI_3007G217600 {ECO:0000313|EMBL:EES15434.1};
OS   Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX   NCBI_TaxID=4558 {ECO:0000313|EMBL:EES15434.1, ECO:0000313|Proteomes:UP000000768};
RN   [1] {ECO:0000313|EMBL:EES15434.1, ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=19189423; DOI=10.1038/nature07723;
RA   Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA   Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA   Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA   Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA   Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA   Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA   Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA   Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT   "The Sorghum bicolor genome and the diversification of grasses.";
RL   Nature 457:551-556(2009).
RN   [2] {ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=29161754; DOI=10.1111/tpj.13781;
RA   McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA   Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA   Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT   "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT   a transcriptome atlas, and signatures of genome organization.";
RL   Plant J. 93:338-354(2018).
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DR   EMBL; CM000766; EES15434.1; -; Genomic_DNA.
DR   RefSeq; XP_002445939.1; XM_002445894.1.
DR   AlphaFoldDB; C5YJ88; -.
DR   EnsemblPlants; EES15434; EES15434; SORBI_3007G217600.
DR   GeneID; 8055213; -.
DR   Gramene; EES15434; EES15434; SORBI_3007G217600.
DR   KEGG; sbi:8055213; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_10_3_1; -.
DR   InParanoid; C5YJ88; -.
DR   OMA; AFCEMGI; -.
DR   OrthoDB; 396831at2759; -.
DR   Proteomes; UP000000768; Chromosome 7.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR47936:SF4; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL; 1.
DR   PANTHER; PTHR47936; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 2.
DR   PROSITE; PS51375; PPR; 4.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}; Signal {ECO:0000256|SAM:SignalP};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   SIGNAL          1..18
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           19..465
FT                   /note="Pentacotripeptide-repeat region of PRORP domain-
FT                   containing protein"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5002958142"
FT   REPEAT          237..271
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          272..306
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          342..376
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          377..411
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          60..105
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   465 AA;  52392 MW;  68AFA93D1EDFDE1A CRC64;
     MLSLGALHKL CAAFDAVALT VIAAGLSRPP SGRHPFSSAH AHSPHPVDFP TIAACRAAVS
     ASKGDRRRRR RPGGGQPSPS SSPAAAAAEE KAEEEQQQQQ PVLVKIKHER DPERLYQLFR
     TNAHNRLLVE NRFAFEDAVA RLAGARRNDL VEEILEQHKA LPQGRREGFV VRIIGLYGKA
     GMPSHALRTF QEMGMYGCPR TAKSLNATMK VLLRAQMFDE ALWLFEEGPE KYGVELDDIS
     CNTVVKIYCD MGDLRAAYRV MQGMEGAGVQ PDVVTYTTLM AAFYKCGQRE VGDGLWNLMR
     LRGCEPTLAT YNVRIQFLIN RERGWQANEL VRKMYAVGIK PDEITYNLII KGFFMMGEHE
     MAKTVFGAMH GRGCKPNSKV YQTMVHYLCE RRDFDLAFRF CKDSMEKNWF PSVNTINQLL
     KGLMAISKDR NAREIMKLVT GRKPPYSDGE MKVFKDILSH RKTGR
//
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