GenomeNet

Database: UniProt
Entry: C5YK11_SORBI
LinkDB: C5YK11_SORBI
Original site: C5YK11_SORBI 
ID   C5YK11_SORBI            Unreviewed;       520 AA.
AC   C5YK11;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   01-SEP-2009, sequence version 1.
DT   24-JAN-2024, entry version 71.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=SORBI_3007G100500 {ECO:0000313|EMBL:EES13662.1};
OS   Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX   NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13662.1, ECO:0000313|Proteomes:UP000000768};
RN   [1] {ECO:0000313|EMBL:EES13662.1, ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=19189423; DOI=10.1038/nature07723;
RA   Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA   Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA   Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA   Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA   Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA   Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA   Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA   Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT   "The Sorghum bicolor genome and the diversification of grasses.";
RL   Nature 457:551-556(2009).
RN   [2] {ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=29161754; DOI=10.1111/tpj.13781;
RA   McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA   Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA   Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT   "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT   a transcriptome atlas, and signatures of genome organization.";
RL   Plant J. 93:338-354(2018).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CM000766; EES13662.1; -; Genomic_DNA.
DR   RefSeq; XP_002444167.1; XM_002444122.1.
DR   AlphaFoldDB; C5YK11; -.
DR   EnsemblPlants; EES13662; EES13662; SORBI_3007G100500.
DR   GeneID; 8067984; -.
DR   Gramene; EES13662; EES13662; SORBI_3007G100500.
DR   KEGG; sbi:8067984; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_20_1; -.
DR   InParanoid; C5YK11; -.
DR   OMA; YNSMIVP; -.
DR   OrthoDB; 899195at2759; -.
DR   Proteomes; UP000000768; Chromosome 7.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR47939:SF5; BNAC02G25990D PROTEIN; 1.
DR   PANTHER; PTHR47939; MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          238..273
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          274..308
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          309..343
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          344..378
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          445..479
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   520 AA;  58545 MW;  26241EAFBF02638C CRC64;
     MAPPLAAVLR PHLSRLGQTL LSRFLRLSTS HCPSDQSDFE PDPDHPIPSA LDNDDGELVC
     FLHRLSSAAS STSSPKEALS LLLSLSPGPS PASPALLVRA LWELRRDPDT AALALRYGDE
     CSAVDGADGA GLPPPADAWH LAVWAAGKAR RFDLAWAVVR RMRNRGVLTG RAMVILMERY
     AAANEVNKAV KTFDVMEKFK VESDQSVFYS LLRALCKSKN IEDAEELLLL RKKFFPLSAE
     GFNIILDGWC NVITDLAEAK RVWREMSNHC ITPDGMSYTL MISCFSKVGS LFDTLRVYDE
     MKKRGWIPGI GVYNSLVYVL TRENCVKDAH NIFSKLTDEG LQPDVETYNS MIVPLCESCK
     LDEARVVMES MILKGIVPTI STYHAFLKQE GIDESLKLLQ KMKEDGCGPK SDTFLMLFDK
     FFLLNESGNA LRVWNEMRKY KISPVRSHYM TVVEGLVKHG CIPRALEYYD EMKEKGFASD
     TQLDKEFKTF LLNNRDHWRG AGKYNIIPQR GKHFAKRSRM
//
DBGET integrated database retrieval system