ID C5YN37_SORBI Unreviewed; 761 AA.
AC C5YN37;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 27-SEP-2017, sequence version 2.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=SWIRM domain-containing protein {ECO:0000259|PROSITE:PS50934};
GN ORFNames=SORBI_3007G036700 {ECO:0000313|EMBL:EES14528.2};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES14528.2, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES14528.2, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SIMILARITY: Belongs to the flavin monoamine oxidase family.
CC {ECO:0000256|ARBA:ARBA00005995}.
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DR EMBL; CM000766; EES14528.2; -; Genomic_DNA.
DR AlphaFoldDB; C5YN37; -.
DR STRING; 4558.C5YN37; -.
DR EnsemblPlants; EES14528; EES14528; SORBI_3007G036700.
DR Gramene; EES14528; EES14528; SORBI_3007G036700.
DR eggNOG; KOG0029; Eukaryota.
DR HOGENOM; CLU_004498_5_0_1; -.
DR InParanoid; C5YN37; -.
DR OMA; FNGYVPE; -.
DR OrthoDB; 5402444at2759; -.
DR Proteomes; UP000000768; Chromosome 7.
DR GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:UniProt.
DR GO; GO:0016491; F:oxidoreductase activity; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR GO; GO:1901564; P:organonitrogen compound metabolic process; IEA:UniProt.
DR Gene3D; 3.90.660.10; -; 1.
DR Gene3D; 3.50.50.60; FAD/NAD(P)-binding domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR002937; Amino_oxidase.
DR InterPro; IPR036188; FAD/NAD-bd_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR10742; FLAVIN MONOAMINE OXIDASE; 1.
DR PANTHER; PTHR10742:SF386; LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A; 1.
DR Pfam; PF01593; Amino_oxidase; 1.
DR Pfam; PF04433; SWIRM; 1.
DR SUPFAM; SSF54373; FAD-linked reductases, C-terminal domain; 1.
DR SUPFAM; SSF51905; FAD/NAD(P)-binding domain; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50934; SWIRM; 1.
PE 3: Inferred from homology;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768}.
FT DOMAIN 55..154
FT /note="SWIRM"
FT /evidence="ECO:0000259|PROSITE:PS50934"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 761 AA; 83396 MW; FD3D2C46AC0ABFBE CRC64;
MSSSSPPRRP QRRAASTRPP SYDESLLDAE LEGLLGDAAS RRVRRLRRLS AEERQRETET
EALIALSLGF PIDELLPEER PLLPPHIANA PNDYIVVRNH ILASWRADPR APLPLGCVLE
TVASSYDRLV AAAYGYLARA GHINFGVSAA FPAAPPPDAA TQGAAAVLVV GAGLAGLAAA
RQLLRFGLRV LVLEGRSRPG GRVYTARLGE DKAAVELGGS VITGIHANPL GVLARQLGLP
LHKVRDRCPL YYPDGRIVET RLDRTIDLVF NTLLDHATKV RESLNEAAER ISLEEAIEKL
RRLYHVARTD EEQMVLNWHF ANLEFSNAGC LSELSLAHWD QDDPYEMGGD HCFLAGGNSR
LIHALCDGVP VLYEKKVSRI EYGVDGVSVT VEEGQIFQAD MVLCTVPLGV LKSGSIVFDP
ELPQEKLGAI QRLGFGLLDK VAMVFPHVFW DENIDTFGCL NKDSSKRGEF FLFYSYHTVS
GGAVLIALVA GEAALEFEKV DPIVSLHRVL GILKGIYGPK GVTVPDPIQS VCTRWGSDPF
CSGSYSHVRV GSSGADYDIL AESVNDRLFF AGEATNRAYP ATMHGALLSG LREASKIHRA
SESLVNSDQK KNSLPKRLKP PNGALLDLFL EPDLEFGRFS FVFSSLTPDD PEATGILRFS
LDKRFFLQPN NPELDGDQKD YSSASGAFHL YATVSREQAD QLQKSSEDDR TRLGVLCKDF
SVKLMGYDNT CDVGSDLISS ILSARKARKL LQHPKNFKIS R
//