ID C5YZG3_SORBI Unreviewed; 396 AA.
AC C5YZG3;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 74.
DE RecName: Full=RNA-polymerase II-associated protein 3-like C-terminal domain-containing protein {ECO:0000259|Pfam:PF13877};
GN ORFNames=SORBI_3009G030300 {ECO:0000313|EMBL:EES18955.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES18955.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES18955.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000768; EES18955.1; -; Genomic_DNA.
DR RefSeq; XP_002440525.1; XM_002440480.1.
DR AlphaFoldDB; C5YZG3; -.
DR SMR; C5YZG3; -.
DR EnsemblPlants; EES18955; EES18955; SORBI_3009G030300.
DR GeneID; 8068173; -.
DR Gramene; EES18955; EES18955; SORBI_3009G030300.
DR KEGG; sbi:8068173; -.
DR eggNOG; KOG4648; Eukaryota.
DR HOGENOM; CLU_023272_2_0_1; -.
DR OrthoDB; 2294768at2759; -.
DR Proteomes; UP000000768; Chromosome 9.
DR ExpressionAtlas; C5YZG3; baseline and differential.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR025986; RPAP3-like_C.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR47329; OS05G0129900 PROTEIN; 1.
DR PANTHER; PTHR47329:SF1; OS05G0129900 PROTEIN; 1.
DR Pfam; PF13877; RPAP3_C; 1.
DR Pfam; PF13181; TPR_8; 2.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS50005; TPR; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339}.
FT REPEAT 38..71
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 105..138
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT DOMAIN 263..351
FT /note="RNA-polymerase II-associated protein 3-like C-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF13877"
SQ SEQUENCE 396 AA; 44043 MW; 9715F5985C916C0B CRC64;
MEYKARSSGT SGTSTKSFRD LYNMKYSSYL NDEPMPDATS EKEQGNEYFK QKKFADAIEC
YSRSIGLSPT AVTFANRAMA YLKLRRFKEA EDDCTEALNL DDRYIKAYSR RITARKELGK
LKEAMEDAEF AISLDPNNPE LRKQYSEIKA LHMEKMAKKV PAPAKRAVSG IAKTADVTSH
PPTISQKDTI MEVDPPVGDA MKIRESASGR SNGGSGVIIN DNTIQTQGRD ANLKPGPEVS
VQDLAARAAS RYMASTVKSV KTPKTAYDFE VSWRALSDDT AQQIQLLKSI PPASLPEIFK
NALSAPFLID IVKCSASIFR DDTALAVSIL ENLARVPRFD LIIMCLSSMH KSELRKIWDQ
VFLAEKASAD DQMEALRQLR GRYIPGGWQD SMLTSS
//
