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Database: UniProt
Entry: C5Z227_SORBI
LinkDB: C5Z227_SORBI
Original site: C5Z227_SORBI 
ID   C5Z227_SORBI            Unreviewed;       845 AA.
AC   C5Z227;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2016, sequence version 2.
DT   24-JAN-2024, entry version 75.
DE   RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN   ORFNames=SORBI_3010G001500 {ECO:0000313|EMBL:EER89028.2};
OS   Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX   NCBI_TaxID=4558 {ECO:0000313|EMBL:EER89028.2, ECO:0000313|Proteomes:UP000000768};
RN   [1] {ECO:0000313|EMBL:EER89028.2, ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=19189423; DOI=10.1038/nature07723;
RA   Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA   Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA   Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA   Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA   Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA   Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA   Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA   Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT   "The Sorghum bicolor genome and the diversification of grasses.";
RL   Nature 457:551-556(2009).
RN   [2] {ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=29161754; DOI=10.1111/tpj.13781;
RA   McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA   Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA   Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT   "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT   a transcriptome atlas, and signatures of genome organization.";
RL   Plant J. 93:338-354(2018).
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DR   EMBL; CM000769; EER89028.2; -; Genomic_DNA.
DR   AlphaFoldDB; C5Z227; -.
DR   EnsemblPlants; EER89028; EER89028; SORBI_3010G001500.
DR   Gramene; EER89028; EER89028; SORBI_3010G001500.
DR   eggNOG; KOG4660; Eukaryota.
DR   HOGENOM; CLU_012447_0_0_1; -.
DR   InParanoid; C5Z227; -.
DR   OMA; RQGFPYT; -.
DR   OrthoDB; 446121at2759; -.
DR   Proteomes; UP000000768; Chromosome 10.
DR   ExpressionAtlas; C5Z227; baseline and differential.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0045836; P:positive regulation of meiotic nuclear division; IBA:GO_Central.
DR   CDD; cd12524; RRM1_MEI2_like; 1.
DR   CDD; cd12529; RRM2_MEI2_like; 1.
DR   CDD; cd12531; RRM3_MEI2_like; 1.
DR   Gene3D; 3.30.70.330; -; 2.
DR   InterPro; IPR034453; MEI2-like_RRM1.
DR   InterPro; IPR034454; MEI2-like_RRM3.
DR   InterPro; IPR007201; Mei2-like_Rrm_C.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   PANTHER; PTHR23189:SF109; PROTEIN MEI2-LIKE 2; 1.
DR   PANTHER; PTHR23189; RNA RECOGNITION MOTIF-CONTAINING; 1.
DR   Pfam; PF00076; RRM_1; 2.
DR   Pfam; PF04059; RRM_2; 1.
DR   SMART; SM00360; RRM; 3.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR   PROSITE; PS50102; RRM; 2.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT   DOMAIN          197..270
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   DOMAIN          282..355
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   REGION          1..34
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          454..519
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          823..845
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        454..484
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   845 AA;  93434 MW;  5D8BAFB8C06B1373 CRC64;
     MDRSSDHFNP PGLAVPAASK SRQMAANNNP WRGPLPPLLN ARAGFGDTSL FSSSLPVLSH
     EKLIFSDSAH GTPSMDDTSA KMKLLADDPD EKDYKFDFDL RQIDDLLPDE DEFFAGITDE
     TEPVGQTNTT EELEEFDVFG NGGGMELDID PVESITVGFA NSSIVDGARG NGINPFGVPS
     TVGTVAGEHP FGEHPSRTLF VRNINSNVED SELRSLFEQY GDIRTLYTAT KHRGFVMISY
     FDIRAARNAM RALQNKPLRR RKLDIHFSIP KENPSDKDLN QGTLVIFNLD PSVSNEEVRQ
     IFGAYGEVKE IRETPNKKHH KFIEFYDVRA AEAALRSLNK SEIAGKRIKL EPSRPGGTRR
     NFMQQLGHDL DQEEPRSYRH SHVGSPVANS PPGAWAYSSP TDNNMLQAFT RSPTGNGMSP
     IGMPSLISNA PKIAPIGKDS NWSKYDQVFS NGNQSQGAAF QHSHSYQDHN SEYMSSSPGT
     LSGPQFLWGS PKPYSEHSKS PIWRPPAIGP ALSSSSRTQG QGFLYSSRQA SLFGSSDQHH
     HHVGSAPSGA PFESHFGFLP ESPETSFMKQ VRFGNMGNVG TGRNGGALML GMAGRASVNP
     GSSLIGSLTD NSSTNFRPIL SPRLGQAFYT NPPYHGPGTF GLDNSIDRAR NRRVDSSVLQ
     ADSKRQYQLD LEKIRRSDDT RTTLMIKNIP NKYTSKMLLA AIDEFHKGTY DFFYLPIDFK
     NKCNVGYAFI NMISPVHIIS FYQAFNGKKW EKFNSEKVAS LAYARIQGRS ALISHFQNSS
     LMNEDKRCRP ILFNPNGQDS VNQEAFPING ICIHMPLEDD CLDNEEDKNQ NEKTGESSTD
     IGGSL
//
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