ID C5Z227_SORBI Unreviewed; 845 AA.
AC C5Z227;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 2.
DT 24-JAN-2024, entry version 75.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=SORBI_3010G001500 {ECO:0000313|EMBL:EER89028.2};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER89028.2, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER89028.2, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000769; EER89028.2; -; Genomic_DNA.
DR AlphaFoldDB; C5Z227; -.
DR EnsemblPlants; EER89028; EER89028; SORBI_3010G001500.
DR Gramene; EER89028; EER89028; SORBI_3010G001500.
DR eggNOG; KOG4660; Eukaryota.
DR HOGENOM; CLU_012447_0_0_1; -.
DR InParanoid; C5Z227; -.
DR OMA; RQGFPYT; -.
DR OrthoDB; 446121at2759; -.
DR Proteomes; UP000000768; Chromosome 10.
DR ExpressionAtlas; C5Z227; baseline and differential.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0045836; P:positive regulation of meiotic nuclear division; IBA:GO_Central.
DR CDD; cd12524; RRM1_MEI2_like; 1.
DR CDD; cd12529; RRM2_MEI2_like; 1.
DR CDD; cd12531; RRM3_MEI2_like; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR034453; MEI2-like_RRM1.
DR InterPro; IPR034454; MEI2-like_RRM3.
DR InterPro; IPR007201; Mei2-like_Rrm_C.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR23189:SF109; PROTEIN MEI2-LIKE 2; 1.
DR PANTHER; PTHR23189; RNA RECOGNITION MOTIF-CONTAINING; 1.
DR Pfam; PF00076; RRM_1; 2.
DR Pfam; PF04059; RRM_2; 1.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 197..270
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 282..355
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 454..519
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 823..845
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 454..484
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 845 AA; 93434 MW; 5D8BAFB8C06B1373 CRC64;
MDRSSDHFNP PGLAVPAASK SRQMAANNNP WRGPLPPLLN ARAGFGDTSL FSSSLPVLSH
EKLIFSDSAH GTPSMDDTSA KMKLLADDPD EKDYKFDFDL RQIDDLLPDE DEFFAGITDE
TEPVGQTNTT EELEEFDVFG NGGGMELDID PVESITVGFA NSSIVDGARG NGINPFGVPS
TVGTVAGEHP FGEHPSRTLF VRNINSNVED SELRSLFEQY GDIRTLYTAT KHRGFVMISY
FDIRAARNAM RALQNKPLRR RKLDIHFSIP KENPSDKDLN QGTLVIFNLD PSVSNEEVRQ
IFGAYGEVKE IRETPNKKHH KFIEFYDVRA AEAALRSLNK SEIAGKRIKL EPSRPGGTRR
NFMQQLGHDL DQEEPRSYRH SHVGSPVANS PPGAWAYSSP TDNNMLQAFT RSPTGNGMSP
IGMPSLISNA PKIAPIGKDS NWSKYDQVFS NGNQSQGAAF QHSHSYQDHN SEYMSSSPGT
LSGPQFLWGS PKPYSEHSKS PIWRPPAIGP ALSSSSRTQG QGFLYSSRQA SLFGSSDQHH
HHVGSAPSGA PFESHFGFLP ESPETSFMKQ VRFGNMGNVG TGRNGGALML GMAGRASVNP
GSSLIGSLTD NSSTNFRPIL SPRLGQAFYT NPPYHGPGTF GLDNSIDRAR NRRVDSSVLQ
ADSKRQYQLD LEKIRRSDDT RTTLMIKNIP NKYTSKMLLA AIDEFHKGTY DFFYLPIDFK
NKCNVGYAFI NMISPVHIIS FYQAFNGKKW EKFNSEKVAS LAYARIQGRS ALISHFQNSS
LMNEDKRCRP ILFNPNGQDS VNQEAFPING ICIHMPLEDD CLDNEEDKNQ NEKTGESSTD
IGGSL
//