ID C6XWL3_PEDHD Unreviewed; 358 AA.
AC C6XWL3;
DT 22-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 22-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 82.
DE SubName: Full=Regulatory protein LacI {ECO:0000313|EMBL:ACU06302.1};
GN OrderedLocusNames=Phep_4111 {ECO:0000313|EMBL:ACU06302.1};
OS Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457
OS / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3).
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Pedobacter.
OX NCBI_TaxID=485917 {ECO:0000313|EMBL:ACU06302.1, ECO:0000313|Proteomes:UP000000852};
RN [1] {ECO:0000313|EMBL:ACU06302.1, ECO:0000313|Proteomes:UP000000852}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 /
RC NCIMB 9290 / NRRL B-14731 / HIM 762-3
RC {ECO:0000313|Proteomes:UP000000852};
RX PubMed=21304637; DOI=10.4056/sigs.22138;
RA Han C., Spring S., Lapidus A., Del Rio T.G., Tice H., Copeland A.,
RA Cheng J.F., Lucas S., Chen F., Nolan M., Bruce D., Goodwin L., Pitluck S.,
RA Ivanova N., Mavromatis K., Mikhailova N., Pati A., Chen A., Palaniappan K.,
RA Land M., Hauser L., Chang Y.J., Jeffries C.C., Saunders E., Chertkov O.,
RA Brettin T., Goker M., Rohde M., Bristow J., Eisen J.A., Markowitz V.,
RA Hugenholtz P., Kyrpides N.C., Klenk H.P., Detter J.C.;
RT "Complete genome sequence of Pedobacter heparinus type strain (HIM 762-
RT 3).";
RL Stand. Genomic Sci. 1:54-62(2009).
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DR EMBL; CP001681; ACU06302.1; -; Genomic_DNA.
DR RefSeq; WP_015809910.1; NZ_AQGK01000003.1.
DR AlphaFoldDB; C6XWL3; -.
DR STRING; 485917.Phep_4111; -.
DR KEGG; phe:Phep_4111; -.
DR eggNOG; COG1609; Bacteria.
DR HOGENOM; CLU_037628_0_1_10; -.
DR OrthoDB; 628703at2; -.
DR Proteomes; UP000000852; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01392; HTH_LacI; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR000843; HTH_LacI.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR025997; SBP_2_dom.
DR PANTHER; PTHR30146:SF145; LACI-FAMILY TRANSCRIPTION REGULATOR; 1.
DR PANTHER; PTHR30146; LACI-RELATED TRANSCRIPTIONAL REPRESSOR; 1.
DR Pfam; PF00356; LacI; 1.
DR Pfam; PF13407; Peripla_BP_4; 1.
DR SMART; SM00354; HTH_LACI; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS00356; HTH_LACI_1; 1.
DR PROSITE; PS50932; HTH_LACI_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000000852};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 4..58
FT /note="HTH lacI-type"
FT /evidence="ECO:0000259|PROSITE:PS50932"
SQ SEQUENCE 358 AA; 41487 MW; EE9162E38C4A46AF CRC64;
MKNIRIKDIA VKAKVSAGTV DRVLHDRGNV SEKVKERILK IIEEMNYEPN FMARALGTKK
EYHFAALIGD PRYDAYWLDP RAGIQKAAKE ARQYGVKVTL FMFNPYDPHS FVKKAEEVSR
ANPDGILLAP MFYREVLPFF EAWKKQEIPF VLFNTQIAEF DPLSYIGQDS YQSGQVAGKL
IHYGQPQPPS VLIAHIDEEI SNSAHLTKKE QGLRNYFIQN NLNHQYEIIK AELNLRNYAL
FVEQLDSIFE GNPQLQFCFV TTSKAFEIAK YFEQKFINHI KIIGYDLIPQ NLHYLNKGSI
SFLINQNPLG QGYWGINQLV DHLVFKKEIS AIKFLPLDIV TKENLNYYID DSMLYNRF
//
