ID CCT13_ORYSJ Reviewed; 490 AA.
AC Q2RAC5; Q2RAC7; Q53NC7; Q53NC8; Q53ND2;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2007, sequence version 2.
DT 27-MAR-2024, entry version 89.
DE RecName: Full=Cyclin-T1-3;
DE Short=CycT1;3;
GN Name=CYCT1-3; OrderedLocusNames=Os11g0157100, LOC_Os11g05850;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
CC -!- SIMILARITY: Belongs to the cyclin family. Cyclin T subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAX92939.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAX92940.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=ABA91549.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=ABA91550.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF27643.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC134048; AAX92938.1; -; Genomic_DNA.
DR EMBL; AC134048; AAX92939.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC134048; AAX92940.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000010; ABA91549.2; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000010; ABA91550.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008217; BAF27643.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014967; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015617039.1; XM_015761553.1.
DR AlphaFoldDB; Q2RAC5; -.
DR SMR; Q2RAC5; -.
DR STRING; 39947.Q2RAC5; -.
DR PaxDb; 39947-Q2RAC5; -.
DR GeneID; 4349827; -.
DR KEGG; osa:4349827; -.
DR eggNOG; KOG0834; Eukaryota.
DR InParanoid; Q2RAC5; -.
DR OrthoDB; 5481797at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR GO; GO:0008024; C:cyclin/CDK positive transcription elongation factor complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0061575; F:cyclin-dependent protein serine/threonine kinase activator activity; IBA:GO_Central.
DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0032786; P:positive regulation of DNA-templated transcription, elongation; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd20587; CYCLIN_AcCycT_rpt1; 1.
DR CDD; cd20588; CYCLIN_AcCycT_rpt2; 1.
DR Gene3D; 1.10.472.10; Cyclin-like; 2.
DR InterPro; IPR013763; Cyclin-like_dom.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR043198; Cyclin/Ssn8.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10026; CYCLIN; 1.
DR PANTHER; PTHR10026:SF160; CYCLIN-T1-3; 1.
DR Pfam; PF00134; Cyclin_N; 1.
DR Pfam; PF21797; CycT2-like_C; 1.
DR PIRSF; PIRSF036580; Cyclin_L; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SUPFAM; SSF47954; Cyclin-like; 2.
PE 3: Inferred from homology;
KW Cell cycle; Cell division; Cyclin; Reference proteome.
FT CHAIN 1..490
FT /note="Cyclin-T1-3"
FT /id="PRO_0000287060"
FT REGION 275..391
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 414..490
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 275..302
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 338..363
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 367..391
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 414..444
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 453..490
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 490 AA; 55949 MW; 6578A134AC20A391 CRC64;
MDGIQTSDSS HHGIVENSPY RTPYDRYAEG GQLGASWYFS RKEIEENSLS RRDGIDLKKE
SYLRKSYCTF LQDLGMRLKV PQVTIATAIV FCHRFFLRQS HAKNDRRTIA TVCMFLAGKV
EETPRPLKDV ILISYEIIHK KDAAAVQRIK QKEVYEQQKE LILLGERVVL VTLGFDLNVH
HPYKPLVEAI KKFKVAQNAL AQVAWNFVND GLRTSLCLQF KPHHIAAGAI FLAAKFLKVK
LPSDGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRVAPPP SQGNDTEGSS ASVVNQRASG
KAPGSSEEPP THENHLAPRQ SSTPGHQGYD HPHPEKQNSS QRVPQNDARD GTANSNEGPN
MSSTMDAMKK IDKDKVKAAL EKRRKSKGDV AKKVDIMDDD DLIERELEHG VELAAEDEKI
KHERRQSWPH SAHREDHQGV ARLTENTEEG ELSIDSQEYR SPELDNRKRK DMHEHRNYDR
GERDLKRLRS
//
