ID CCT14_ORYSJ Reviewed; 543 AA.
AC Q2QQS5; B7EPW6;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 27-MAR-2024, entry version 115.
DE RecName: Full=Cyclin-T1-4;
DE Short=CycT1;4;
GN Name=CYCT1-1; OrderedLocusNames=Os12g0485400, LOC_Os12g30020;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
CC -!- SIMILARITY: Belongs to the cyclin family. Cyclin T subfamily.
CC {ECO:0000305}.
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DR EMBL; DP000011; ABA98525.1; -; Genomic_DNA.
DR EMBL; DP000011; ABG22024.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF29800.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT17171.1; -; Genomic_DNA.
DR EMBL; AK100044; BAG94413.1; -; mRNA.
DR EMBL; AK100051; BAG94417.1; -; mRNA.
DR RefSeq; XP_015619900.1; XM_015764414.1.
DR RefSeq; XP_015619901.1; XM_015764415.1.
DR AlphaFoldDB; Q2QQS5; -.
DR SMR; Q2QQS5; -.
DR STRING; 39947.Q2QQS5; -.
DR PaxDb; 39947-Q2QQS5; -.
DR EnsemblPlants; Os12t0485400-01; Os12t0485400-01; Os12g0485400.
DR GeneID; 4352229; -.
DR Gramene; Os12t0485400-01; Os12t0485400-01; Os12g0485400.
DR KEGG; osa:4352229; -.
DR eggNOG; KOG0834; Eukaryota.
DR HOGENOM; CLU_022000_8_1_1; -.
DR InParanoid; Q2QQS5; -.
DR OMA; WGAGNEM; -.
DR OrthoDB; 369122at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q2QQS5; OS.
DR GO; GO:0008024; C:cyclin/CDK positive transcription elongation factor complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0061575; F:cyclin-dependent protein serine/threonine kinase activator activity; IBA:GO_Central.
DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0032786; P:positive regulation of DNA-templated transcription, elongation; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd20587; CYCLIN_AcCycT_rpt1; 1.
DR CDD; cd20588; CYCLIN_AcCycT_rpt2; 1.
DR Gene3D; 1.10.472.10; Cyclin-like; 2.
DR InterPro; IPR013763; Cyclin-like_dom.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR043198; Cyclin/Ssn8.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10026; CYCLIN; 1.
DR PANTHER; PTHR10026:SF51; CYCLIN-K; 1.
DR Pfam; PF00134; Cyclin_N; 1.
DR Pfam; PF21797; CycT2-like_C; 1.
DR PIRSF; PIRSF036580; Cyclin_L; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SUPFAM; SSF47954; Cyclin-like; 2.
PE 2: Evidence at transcript level;
KW Cell cycle; Cell division; Cyclin; Reference proteome.
FT CHAIN 1..543
FT /note="Cyclin-T1-4"
FT /id="PRO_0000287061"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 276..330
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 343..408
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 460..543
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 10..27
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 276..326
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 343..365
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 382..408
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 460..485
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 489..503
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 505..543
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 543 AA; 61391 MW; 8832BD2D46597E13 CRC64;
MAMMPSDSSH HGIVENSPYR TTQGRNEETG ELGASWYFSR KEIEENSPSR RDGIDLKKES
YLRKSYCTFL QDLGMRLKVP QVTIATAIVF CHRFYLRQSH AKNDRRTIAT VCMFLAGKVE
ETPRPLKDVI LVSYEIIHKK DPAAGQRIKQ KEVYDQQKEL ILLAERVVLA TLGFDLNVHH
PYKPLVEAIR KFKVAQNALA QVAWNFVNDG LRTSLCLQFK PHHIAAGAIF LAAKFLKVKL
PSDGEKVWWQ EFDVTPRQLE EVSNQMLELY EQNCAAQAQP SHGNEAEGSS ASVPNQRVSV
KSEETPLPHQ SKQSSSQHST GAPSHHGVEH SNLEKQTVDQ KMLQNDNGDH GSNKTRSNQS
GSRVDFGAND GLHHDKQSMT ENKNLPSHGN SSEIRDVNRN GNDGTNVTSL MVNKIDKDKV
KAQMEKQRKL KGDVARKVEV IDDDDDLERQ LEHDIELAVE DNKIKQERKQ SSPHVMHRGD
HRNADQVTGN GHLGKQNTPE TAQDAPMDDI KEQRNSHGSK HHDSHDTAHE RGERDYKRPR
PEG
//
