ID D0E2T6_CIRV Unreviewed; 386 AA.
AC D0E2T6;
DT 24-NOV-2009, integrated into UniProtKB/TrEMBL.
DT 24-NOV-2009, sequence version 1.
DT 13-SEP-2023, entry version 22.
DE RecName: Full=Capsid protein {ECO:0000256|ARBA:ARBA00018091};
DE AltName: Full=Coat protein {ECO:0000256|ARBA:ARBA00031336};
DE AltName: Full=p41 {ECO:0000256|ARBA:ARBA00031782};
OS Carnation Italian ringspot virus (CIRV).
OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes;
OC Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus;
OC Tombusvirus dianthi.
OX NCBI_TaxID=39443 {ECO:0000313|EMBL:ACX53277.1};
OH NCBI_TaxID=3570; Dianthus caryophyllus (Carnation) (Clove pink).
RN [1] {ECO:0000313|EMBL:ACX53277.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=K483 {ECO:0000313|EMBL:ACX53277.1};
RX PubMed=19768632; DOI=10.1007/s00705-009-0491-9;
RA Koenig R., Lesemann D.E., Pfeilstetter E.;
RT "New isolates of carnation Italian ringspot virus differ from the original
RT one by having replication-associated proteins with a typical tombusvirus-
RT like N-terminus and by inducing peroxisome- rather than mitochondrion-
RT derived multivesicular bodies.";
RL Arch. Virol. 154:1695-1698(2009).
RN [2] {ECO:0000313|EMBL:QWB49516.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DSMZ PV-0069 {ECO:0000313|EMBL:QWB49516.1};
RA Knierim D., Margaria P., Menzel W., Winter S.;
RT "Carnation Italian ringspot virus isolate DSMZ PV-0069.";
RL Submitted (JUN-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Capsid protein self-assembles to form an icosahedral capsid
CC with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180
CC capsid proteins. {ECO:0000256|ARBA:ARBA00002495}.
CC -!- SUBUNIT: Homomultimer. {ECO:0000256|ARBA:ARBA00011553}.
CC -!- SIMILARITY: Belongs to the icosahedral plant coat protein family.
CC {ECO:0000256|ARBA:ARBA00007446}.
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DR EMBL; GQ259477; ACX53277.1; -; Genomic_RNA.
DR EMBL; MT663312; QWB49516.1; -; Genomic_RNA.
DR GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 2.60.120.20; -; 1.
DR InterPro; IPR000937; Capsid_prot_S-dom_vir.
DR InterPro; IPR029053; Viral_coat.
DR Pfam; PF00729; Viral_coat; 1.
DR PRINTS; PR00233; ICOSAHEDRAL.
DR SUPFAM; SSF88633; Positive stranded ssRNA viruses; 1.
DR PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1.
PE 3: Inferred from homology;
KW Capsid protein {ECO:0000313|EMBL:ACX53277.1};
KW T=3 icosahedral capsid protein {ECO:0000256|ARBA:ARBA00023060};
KW Virion {ECO:0000256|ARBA:ARBA00023060}.
FT DOMAIN 73..265
FT /note="Icosahedral viral capsid protein S"
FT /evidence="ECO:0000259|Pfam:PF00729"
SQ SEQUENCE 386 AA; 40965 MW; 0DC4294284077AFA CRC64;
MTMVLRNPGT MVPQGGNKMS KMAKNAFQQG LQAGAAYLMS NPKGALKKGK DAWNYMTAGG
VPSGIVHSGG MKGAIMAPVA VTRQLRGSKP KFSGRTSGSV TVSHRELITQ VNNSTQFVVN
GGVTGNLRQV NPLNGTLFSW LPSIAANFDQ YTFNSVTLHY VPLCATTETG RVAMYFDKDS
EDLEPADRVE LANYATLKET APWAEAMLRI PTDRIKRYND DSSVNDRKLI DLGQIGIATY
GGSGTNPVGD VFISYSVTLH FPQPTAAGVQ TRRLDLTSVL DTNVGPSYTI TSSTATVYTV
AFRTVGTFML FGAVRSTGSP VIGLSSANIA INSNTTLNTA GTAFSYMTNV TVSALPASIT
FTVVGVITSS TSHAVRASRT DNADLI
//