ID D0L347_GORB4 Unreviewed; 1301 AA.
AC D0L347;
DT 15-DEC-2009, integrated into UniProtKB/TrEMBL.
DT 15-DEC-2009, sequence version 1.
DT 27-MAR-2024, entry version 77.
DE SubName: Full=WD40 repeat, subgroup {ECO:0000313|EMBL:ACY22977.1};
GN OrderedLocusNames=Gbro_3798 {ECO:0000313|EMBL:ACY22977.1};
OS Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198
OS / KCTC 3076 / NBRC 16047 / NCTC 10667) (Rhodococcus bronchialis).
OC Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Gordoniaceae;
OC Gordonia.
OX NCBI_TaxID=526226 {ECO:0000313|EMBL:ACY22977.1, ECO:0000313|Proteomes:UP000001219};
RN [1] {ECO:0000313|Proteomes:UP000001219}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 /
RC NBRC 16047 / NCTC 10667 {ECO:0000313|Proteomes:UP000001219};
RG US DOE Joint Genome Institute (JGI-PGF);
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Ivanova N.,
RA Ovchinnikova G., Saunders E., Brettin T., Detter J.C., Han C., Larimer F.,
RA Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T.,
RA Wu D., Jando M., Schneider S., Goeker M., Klenk H.-P., Eisen J.A.;
RT "The complete chromosome of Gordonia bronchialis DSM 43247.";
RL Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACY22977.1, ECO:0000313|Proteomes:UP000001219}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 /
RC NBRC 16047 / NCTC 10667 {ECO:0000313|Proteomes:UP000001219};
RX PubMed=21304674;
RA Ivanova N., Sikorski J., Jando M., Lapidus A., Nolan M., Lucas S.,
RA Del Rio T.G., Tice H., Copeland A., Cheng J.F., Chen F., Bruce D.,
RA Goodwin L., Pitluck S., Mavromatis K., Ovchinnikova G., Pati A., Chen A.,
RA Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Chain P.,
RA Saunders E., Han C., Detter J.C., Brettin T., Rohde M., Goker M.,
RA Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Klenk H.P.,
RA Kyrpides N.C.;
RT "Complete genome sequence of Gordonia bronchialis type strain (3410).";
RL Stand. Genomic Sci. 2:19-28(2010).
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DR EMBL; CP001802; ACY22977.1; -; Genomic_DNA.
DR RefSeq; WP_012835481.1; NC_013441.1.
DR STRING; 526226.Gbro_3798; -.
DR KEGG; gbr:Gbro_3798; -.
DR eggNOG; COG2319; Bacteria.
DR HOGENOM; CLU_002352_0_2_11; -.
DR OrthoDB; 134501at2; -.
DR Proteomes; UP000001219; Chromosome.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR049052; nSTAND1.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR011047; Quinoprotein_ADH-like_supfam.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19848:SF8; E3 UBIQUITIN-PROTEIN LIGASE TRAF7; 1.
DR PANTHER; PTHR19848; WD40 REPEAT PROTEIN; 1.
DR Pfam; PF13560; HTH_31; 1.
DR Pfam; PF20703; nSTAND1; 1.
DR Pfam; PF00400; WD40; 2.
DR SMART; SM00320; WD40; 9.
DR SUPFAM; SSF75011; 3-carboxy-cis,cis-mucoante lactonizing enzyme; 1.
DR SUPFAM; SSF101898; NHL repeat; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF50998; Quinoprotein alcohol dehydrogenase-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 1.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000001219};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT TRANSMEM 544..567
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 96..488
FT /note="Novel STAND NTPase 1"
FT /evidence="ECO:0000259|Pfam:PF20703"
FT REPEAT 1188..1221
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 1301 AA; 137939 MW; 4EE1A42508FD426E CRC64;
MGPDSVHSRD ELGVALTELR QRAGLSVRDV ASEADALLGT VAGWFAGQHA PTAASREMFE
SVLTVCGVPA AEHPEWWAAV TRVSRRPSRR TRPACPYRGF VEFSQSDSHL MFGRDDLLAR
LLDLVDSWHR GPDGPTTVMV VGASGVGKSS LVRSGLLGRI GRPLTDSDQT GPDTPGIDLS
AWRGVVMVPG EDPTAALDSA IADLAGASGP AVLVVDQVEE LWTQNCRERR LEFSRRIAEL
AVSRTVLPTG VLRADFYGQV AAVSWLTGAL EHSQIVVPPM TMDQLREVIV RPAEAVGATV
DDDLVDMLLE ELSPGVVPPG AAAAPGVLPL LSHALRATWD RSDCRRLTVG NYLATGRIGG
AVEQTAERVY QALPSTAQDL ARRLILEMIN VDEDSVTRRT VALADFATEE PVADDAVLPQ
WTPSRVLERF ADAQLITITD SYAQVAHEAL LTAWPRLTEW IEADQERLLL ARRLRTLCEH
WEDNGRRDDL LPGGPTLAMF ATLADDSGSV SLDQRSREFL EAGQARHEAA TEAERNRARQ
LRRVAVSAVV FGVVAVLAAI TAVLAGVNAV QQRQQAEEVR NEALSRQLAV QSSEMSRRDP
ALAAQRAMVA YRQAPTLQAR SRLIEAAGDP VPTRFIAGPG PVRLATDDRG TILAAVSQSG
YVRVFGLGPD GVTGQTSTFE VTRRGEGALG AVTFVPGTST LLAGGRNSVS AWRLDNPAAP
TRIGELPGVR GQVESLAVSR DGRLVVAGVG GVGAVVWTRP AALPATTPAD SSAVPWGPGS
WTQIAMPADA AAEEGGAVAV SPSGALVATS TAFRRIELWR NLGDRLARAG EVHLAAGADN
QRAEDLTFGP DDRTLFAGLR SRTVDVFDVG DPAAPRRTGQ HGGFNDYIST LAVSADGTQL
AAGGADNSVR IIDLRDPAAP ARSLPVPANV TSVLFAGTHV IMAGADGIVV DWPPSRSVVT
IGTGAVYQIP ADRLGTRILA SDTTIDGRVT QWAVSSGTMR RAGPDLLPPP DEVFSGAAVL
SGTGRIAVMG TVSGAVVFAD YTDPAAPRIL SRVPAQSSLN ETVDYSERSG IAVTGATDLG
KATVLDASDP SNPRVVGEFD AGDGAWWVSL SPDGRRVAVA TVSGAVLVYD LSTPSTPRLL
GVVHRFETAA LSVRFDASGT RLIAASENKR VAVVDVTDPR HPHTVAEMSG PTSELYSAAF
SSDGRRVVAG GSNAEVWVWD IGDNGPKRVA VLRSFPGRVY DVRLTPDGRL YASGEGGVLR
SWEIDAARVM DELCARPGDQ ITKAEWRNYL PDVPYDPPCP R
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