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Database: UniProt
Entry: D0MJ09_RHOM4
LinkDB: D0MJ09_RHOM4
Original site: D0MJ09_RHOM4 
ID   D0MJ09_RHOM4            Unreviewed;       252 AA.
AC   D0MJ09;
DT   15-DEC-2009, integrated into UniProtKB/TrEMBL.
DT   15-DEC-2009, sequence version 1.
DT   24-JAN-2024, entry version 66.
DE   SubName: Full=RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ACY48467.1};
GN   OrderedLocusNames=Rmar_1580 {ECO:0000313|EMBL:ACY48467.1};
OS   Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) (Rhodothermus
OS   obamensis).
OC   Bacteria; Rhodothermota; Rhodothermia; Rhodothermales; Rhodothermaceae;
OC   Rhodothermus.
OX   NCBI_TaxID=518766 {ECO:0000313|EMBL:ACY48467.1, ECO:0000313|Proteomes:UP000002221};
RN   [1] {ECO:0000313|EMBL:ACY48467.1, ECO:0000313|Proteomes:UP000002221}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 43812 / DSM 4252 / R-10
RC   {ECO:0000313|Proteomes:UP000002221};
RX   PubMed=21304669; DOI=10.4056/sigs.46736;
RA   Nolan M., Tindall B.J., Pomrenke H., Lapidus A., Copeland A.,
RA   Glavina Del Rio T., Lucas S., Chen F., Tice H., Cheng J.F., Saunders E.,
RA   Han C., Bruce D., Goodwin L., Chain P., Pitluck S., Ovchinikova G.,
RA   Pati A., Ivanova N., Mavromatis K., Chen A., Palaniappan K., Land M.,
RA   Hauser L., Chang Y.J., Jeffries C.D., Brettin T., Goker M., Bristow J.,
RA   Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P.,
RA   Detter J.C.;
RT   "Complete genome sequence of Rhodothermus marinus type strain (R-10).";
RL   Stand. Genomic Sci. 1:283-291(2009).
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DR   EMBL; CP001807; ACY48467.1; -; Genomic_DNA.
DR   RefSeq; WP_012844078.1; NC_013501.1.
DR   AlphaFoldDB; D0MJ09; -.
DR   STRING; 518766.Rmar_1580; -.
DR   KEGG; rmr:Rmar_1580; -.
DR   eggNOG; COG0566; Bacteria.
DR   HOGENOM; CLU_021322_0_1_10; -.
DR   OMA; QVPPYEY; -.
DR   OrthoDB; 9794400at2; -.
DR   Proteomes; UP000002221; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProt.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR   GO; GO:0001510; P:RNA methylation; IEA:GOC.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   CDD; cd18103; SpoU-like_RlmB; 1.
DR   Gene3D; 3.30.1330.30; -; 1.
DR   Gene3D; 3.40.1280.10; -; 1.
DR   InterPro; IPR029028; Alpha/beta_knot_MTases.
DR   InterPro; IPR029064; Ribosomal_eL30-like_sf.
DR   InterPro; IPR004441; rRNA_MeTrfase_TrmH.
DR   InterPro; IPR001537; SpoU_MeTrfase.
DR   InterPro; IPR013123; SpoU_subst-bd.
DR   InterPro; IPR029026; tRNA_m1G_MTases_N.
DR   NCBIfam; TIGR00186; rRNA_methyl_3; 1.
DR   PANTHER; PTHR46429; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR   PANTHER; PTHR46429:SF1; 23S RRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE RLMB; 1.
DR   Pfam; PF00588; SpoU_methylase; 1.
DR   Pfam; PF08032; SpoU_sub_bind; 1.
DR   SMART; SM00967; SpoU_sub_bind; 1.
DR   SUPFAM; SSF75217; alpha/beta knot; 1.
DR   SUPFAM; SSF55315; L30e-like; 1.
PE   4: Predicted;
KW   Methyltransferase {ECO:0000313|EMBL:ACY48467.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002221};
KW   Transferase {ECO:0000313|EMBL:ACY48467.1}.
FT   DOMAIN          7..83
FT                   /note="RNA 2-O ribose methyltransferase substrate binding"
FT                   /evidence="ECO:0000259|SMART:SM00967"
SQ   SEQUENCE   252 AA;  26818 MW;  FF35CBF24C4E89C2 CRC64;
     MNEAIDRLVG RNPVREALEQ EETRVEKVLL QEGAGGPALE AIRRAARAHG VPVQMVPKAR
     LDRLAAGAVH QGVVAFVAPV RYRTLEELLD EVAPSPEAVR ERLPLLVALD QIEDPHNYGA
     ILRTAAAAGV AGVLVPRHHM APLNAAALKA SAGAALRIPI ARVTNLTRAL ESLKAHGFWV
     AGASPSGEVS VWEMDWHRPL VLVLGNEGRG LRPGVAQACD LLVSIPLRGP VESLNVSVAA
     GILLFAATRT RQ
//
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