ID D1QM61_9BACT Unreviewed; 144 AA.
AC D1QM61;
DT 09-FEB-2010, integrated into UniProtKB/TrEMBL.
DT 09-FEB-2010, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000256|HAMAP-Rule:MF_00651};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651};
GN ORFNames=HMPREF0971_00043 {ECO:0000313|EMBL:EFB33284.1};
OS Segatella oris F0302.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Segatella.
OX NCBI_TaxID=649760 {ECO:0000313|EMBL:EFB33284.1, ECO:0000313|Proteomes:UP000004079};
RN [1] {ECO:0000313|EMBL:EFB33284.1, ECO:0000313|Proteomes:UP000004079}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=F0302 {ECO:0000313|EMBL:EFB33284.1,
RC ECO:0000313|Proteomes:UP000004079};
RA Weinstock G., Sodergren E., Clifton S., Fulton L., Fulton B., Courtney L.,
RA Fronick C., Harrison M., Strong C., Farmer C., Delahaunty K., Markovic C.,
RA Hall O., Minx P., Tomlinson C., Mitreva M., Nelson J., Hou S., Wollam A.,
RA Pepin K.H., Johnson M., Bhonagiri V., Nash W.E., Warren W., Chinwalla A.,
RA Mardis E.R., Wilson R.K.;
RL Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC pre-16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00651}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651}.
CC -!- SIMILARITY: Belongs to the YqgF HJR family. {ECO:0000256|HAMAP-
CC Rule:MF_00651}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFB33284.1}.
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DR EMBL; ACUZ02000003; EFB33284.1; -; Genomic_DNA.
DR RefSeq; WP_004370863.1; NZ_GG703883.1.
DR AlphaFoldDB; D1QM61; -.
DR STRING; 649760.HMPREF0971_00043; -.
DR GeneID; 85012347; -.
DR HOGENOM; CLU_098240_2_1_10; -.
DR Proteomes; UP000004079; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR CDD; cd16964; YqgF; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR HAMAP; MF_00651; Nuclease_YqgF; 1.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR005227; YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR NCBIfam; TIGR00250; RNAse_H_YqgF; 1.
DR PANTHER; PTHR33317; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR PANTHER; PTHR33317:SF4; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR Pfam; PF03652; RuvX; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00651};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00651};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00651};
KW Ribosome biogenesis {ECO:0000256|ARBA:ARBA00022517, ECO:0000256|HAMAP-
KW Rule:MF_00651}.
FT DOMAIN 2..100
FT /note="YqgF/RNase H-like"
FT /evidence="ECO:0000259|SMART:SM00732"
SQ SEQUENCE 144 AA; 16517 MW; 2E917D817EF3630A CRC64;
MARILSIDYG KKRTGLAVTD SLQIIANGLA TVSTSSLIDY LKDYIAKEPV ERIVIGRPTQ
PDGRPSENLA RVEQFVNRWR KLVPNIPIEY YDERFTSVIA HQVVIDSGVR KKVRKENKGL
IDEISATIIL QDYMQYRHSM LNRK
//
