ID D2IDN0_9FLOR Unreviewed; 337 AA.
AC D2IDN0;
DT 09-FEB-2010, integrated into UniProtKB/TrEMBL.
DT 09-FEB-2010, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
DE Flags: Fragment;
OS Ceramium pacificum.
OC Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Ceramiales;
OC Ceramiaceae; Ceramium.
OX NCBI_TaxID=679013 {ECO:0000313|EMBL:ACX41892.1};
RN [1] {ECO:0000313|EMBL:ACX41892.1}
RP NUCLEOTIDE SEQUENCE.
RA Carlile A.L., Waaland J.R.;
RT "Where Ceramium codicola meets Ceramium pacificum: Comparative
RT phylogeography of two West Coast Ceramium species.";
RL Submitted (MAY-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550};
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DR EMBL; GQ179778; ACX41892.1; -; Genomic_DNA.
DR AlphaFoldDB; D2IDN0; -.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF37; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 1..24
FT /note="RNA polymerase alpha subunit"
FT /evidence="ECO:0000259|Pfam:PF00623"
FT DOMAIN 27..190
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04983"
FT DOMAIN 218..322
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF05000"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ACX41892.1"
FT NON_TER 337
FT /evidence="ECO:0000313|EMBL:ACX41892.1"
SQ SEQUENCE 337 AA; 37417 MW; AA96AC1C56143014 CRC64;
GDEMNMHVPQ SHQTRAEVQE LMLVPHCIVS PQSNKPVMGI VQDTLLGASL FTRRDAFLER
DLVMNLLMHI SDWDGVVPQP TILKPRPLWT GKQIFSLILP PVNLIKKSGQ FDEKPDRSDI
TAYDTKIYIL KGELITGIVC KKTVGSSPGG LIHTTWKERG ARETDKLISQ IQVLINHFVL
QRGCSIGIGD SIADSKTMSN VITIIEKSKT EVKELIRKAQ ENSLGLLPGK DLMETFEGRV
NTALNKARDD SGKTAESSLP TSNNIKRMVS AGSKGSFINI SQICACVGQQ NVEGRRISYG
FHRRTLPHFV VDDLGPESRG FVENSYLRGL TPSEFFF
//
