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Database: UniProt
Entry: D3S5R4_METSF
LinkDB: D3S5R4_METSF
Original site: D3S5R4_METSF 
ID   D3S5R4_METSF            Unreviewed;       338 AA.
AC   D3S5R4;
DT   20-APR-2010, integrated into UniProtKB/TrEMBL.
DT   20-APR-2010, sequence version 1.
DT   24-JAN-2024, entry version 60.
DE   SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:ADC70178.1};
GN   OrderedLocusNames=MFS40622_1506 {ECO:0000313|EMBL:ADC70178.1};
OS   Methanocaldococcus sp. (strain FS406-22).
OC   Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales;
OC   Methanocaldococcaceae; Methanocaldococcus.
OX   NCBI_TaxID=644281 {ECO:0000313|EMBL:ADC70178.1, ECO:0000313|Proteomes:UP000002189};
RN   [1] {ECO:0000313|EMBL:ADC70178.1, ECO:0000313|Proteomes:UP000002189}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=FS406-22 {ECO:0000313|EMBL:ADC70178.1,
RC   ECO:0000313|Proteomes:UP000002189};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA   Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Larimer F., Land M.,
RA   Hauser L., Kyrpides N., Mikhailova N., Sieprawska-Lupa M., Leigh J.,
RA   Whitman W.B., Woyke T.;
RT   "Complete sequence of chromosome of Methanocaldococcus sp. FS406-22.";
RL   Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000256|PIRSR:PIRSR004869-50};
CC       Note=Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3
CC       cysteines and an exchangeable S-adenosyl-L-methionine.
CC       {ECO:0000256|PIRSR:PIRSR004869-50};
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DR   EMBL; CP001901; ADC70178.1; -; Genomic_DNA.
DR   AlphaFoldDB; D3S5R4; -.
DR   STRING; 644281.MFS40622_1506; -.
DR   KEGG; mfs:MFS40622_1506; -.
DR   eggNOG; arCOG00934; Archaea.
DR   HOGENOM; CLU_062674_0_1_2; -.
DR   OMA; WNSNMYM; -.
DR   OrthoDB; 371936at2157; -.
DR   Proteomes; UP000002189; Chromosome.
DR   GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR   GO; GO:0051536; F:iron-sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   CDD; cd01335; Radical_SAM; 1.
DR   Gene3D; 3.20.20.70; Aldolase class I; 1.
DR   InterPro; IPR013785; Aldolase_TIM.
DR   InterPro; IPR040085; MJ0674-like.
DR   InterPro; IPR016431; Pyrv-formate_lyase-activ_prd.
DR   InterPro; IPR007197; rSAM.
DR   PANTHER; PTHR43075; FORMATE LYASE ACTIVATING ENZYME, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G15630)-RELATED; 1.
DR   PANTHER; PTHR43075:SF1; FORMATE LYASE ACTIVATING ENZYME, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G15630)-RELATED; 1.
DR   Pfam; PF13353; Fer4_12; 1.
DR   Pfam; PF04055; Radical_SAM; 1.
DR   PIRSF; PIRSF004869; PflX_prd; 1.
DR   SFLD; SFLDS00029; Radical_SAM; 1.
DR   SFLD; SFLDG01099; Uncharacterised_Radical_SAM_Su; 1.
DR   SUPFAM; SSF102114; Radical SAM enzymes; 1.
DR   PROSITE; PS51918; RADICAL_SAM; 1.
PE   4: Predicted;
KW   Iron {ECO:0000256|ARBA:ARBA00023004, ECO:0000256|PIRSR:PIRSR004869-50};
KW   Iron-sulfur {ECO:0000256|ARBA:ARBA00023014, ECO:0000256|PIRSR:PIRSR004869-
KW   50};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723,
KW   ECO:0000256|PIRSR:PIRSR004869-50};
KW   S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691,
KW   ECO:0000256|PIRSR:PIRSR004869-50}.
FT   DOMAIN          111..334
FT                   /note="Radical SAM core"
FT                   /evidence="ECO:0000259|PROSITE:PS51918"
FT   BINDING         129
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_note="4Fe-4S-S-AdoMet"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR004869-50"
FT   BINDING         133
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_note="4Fe-4S-S-AdoMet"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR004869-50"
FT   BINDING         136
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_note="4Fe-4S-S-AdoMet"
FT                   /evidence="ECO:0000256|PIRSR:PIRSR004869-50"
SQ   SEQUENCE   338 AA;  40151 MW;  DE6BF408CE284F53 CRC64;
     MKLSRYLAIS RDLAPAKFMI AKCIEVEEFN GLELNELWEI HNKILKKVDF DDFDFNNLEF
     VKPNLLDLKV EIAKRIFRNC HFCEHRCYAN REFERGFCRI KESYYSTEFL HLGEERVLVP
     SHTIFFCGCN FKCVFCQNWD ISQVYFDTTI PNHCIPYNPK EMAKIIKHKR DYSKNVNFVG
     GDPTPHLLSI LKTLNYLDKN IPVVWNSNMY LTVKGMYLLK GVVDVYLTDF KFGNNECGER
     LSKVKNYFDI VGRNHLLIKD EEVIIRHLVM PNHLDCCTER IFDFISKNLD NAVVNVMFQY
     RPEYKAKEYP DINRRLTYDE IEKALELAEE YKLDLIYD
//
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