ID D3WBS9_LONJA Unreviewed; 160 AA.
AC D3WBS9;
DT 20-APR-2010, integrated into UniProtKB/TrEMBL.
DT 20-APR-2010, sequence version 1.
DT 08-NOV-2023, entry version 44.
DE RecName: Full=Large ribosomal subunit protein uL22c {ECO:0000256|HAMAP-Rule:MF_01331};
GN Name=rpl22 {ECO:0000256|HAMAP-Rule:MF_01331,
GN ECO:0000313|EMBL:ADD30274.1};
GN ORFNames=Lonja_cp061 {ECO:0000313|EMBL:AHN53015.1};
OS Lonicera japonica (Japanese honeysuckle) (Lonicera aureoreticulata).
OG Plastid; Chloroplast {ECO:0000313|EMBL:ADD30274.1}.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Dipsacales; Caprifoliaceae; Lonicera.
OX NCBI_TaxID=105884 {ECO:0000313|EMBL:ADD30274.1};
RN [1] {ECO:0000313|EMBL:ADD30274.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=20176954; DOI=10.1073/pnas.0907801107;
RA Moore M.J., Soltis P.S., Bell C.D., Burleigh J.G., Soltis D.E.;
RT "Phylogenetic analysis of 83 plastid genes further resolves the early
RT diversification of eudicots.";
RL Proc. Natl. Acad. Sci. U.S.A. 107:4623-4628(2010).
RN [2] {ECO:0000313|EMBL:AHN53015.1}
RP NUCLEOTIDE SEQUENCE.
RA He L., Qian J.;
RT "The Complete Chloroplast Genome Sequence of Lonicera japonica.";
RL Submitted (JAN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AXS67067.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=30121427; DOI=10.1016/j.phytochem.2018.07.012;
RA Kang K.B., Kang S.J., Kim M.S., Lee D.Y., Han S.I., Kim T.B., Park J.Y.,
RA Kim J., Yang T.J., Sung S.H.;
RT "Chemical and genomic diversity of six Lonicera species occurring in
RT Korea.";
RL Phytochemistry 155:126-135(2018).
RN [4] {ECO:0000313|EMBL:AXS67067.1}
RP NUCLEOTIDE SEQUENCE.
RA Keele B.F.;
RL Submitted (MAR-2018) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:QAU08684.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=01_Dong_130469 {ECO:0000313|EMBL:QAU08684.1};
RA Xiang C.L., Dong H.J., Landrein S., Zhao F., Yu W.-B., Soltis D.E.,
RA Solits P.S., Backlund A., Wang H.F., Li D.Z., Peng H.;
RT "Revisiting the phylogeny of Dipsacales: new insights from analysis of
RT complete chloroplast genome sequences.";
RL Submitted (NOV-2018) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:UDF87653.1}
RP NUCLEOTIDE SEQUENCE.
RA Zhang J., Liu H., Zhu K.;
RT "Complete Chloroplast Genome Sequence and Characteristics Analysis of
RT Lonicera japonica cv. Damaohua.";
RL Submitted (AUG-2021) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: The globular domain of the protein is located near the
CC polypeptide exit tunnel on the outside of the subunit, while an
CC extended beta-hairpin is found that lines the wall of the exit tunnel
CC in the center of the 70S ribosome. {ECO:0000256|ARBA:ARBA00003478,
CC ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004009}.
CC -!- FUNCTION: This protein binds specifically to 23S rRNA.
CC {ECO:0000256|ARBA:ARBA00003611, ECO:0000256|HAMAP-Rule:MF_01331,
CC ECO:0000256|RuleBase:RU004009}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit.
CC {ECO:0000256|ARBA:ARBA00011838, ECO:0000256|HAMAP-Rule:MF_01331}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000256|HAMAP-
CC Rule:MF_01331, ECO:0000256|RuleBase:RU004009}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL22 family.
CC {ECO:0000256|ARBA:ARBA00009451, ECO:0000256|HAMAP-Rule:MF_01331,
CC ECO:0000256|RuleBase:RU004005}.
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DR EMBL; GQ997435; ADD30274.1; -; Genomic_DNA.
DR EMBL; KJ170923; AHN53015.1; -; Genomic_DNA.
DR EMBL; MH028738; AXS67067.1; -; Genomic_DNA.
DR EMBL; MK137128; QAU08684.1; -; Genomic_DNA.
DR EMBL; MZ779026; UDF87653.1; -; Genomic_DNA.
DR RefSeq; YP_009130999.1; NC_026839.1.
DR AlphaFoldDB; D3WBS9; -.
DR GeneID; 24144144; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR CDD; cd00336; Ribosomal_L22; 1.
DR Gene3D; 3.90.470.10; Ribosomal protein L22/L17; 1.
DR HAMAP; MF_01331_B; Ribosomal_L22_B; 1.
DR InterPro; IPR001063; Ribosomal_uL22.
DR InterPro; IPR005727; Ribosomal_uL22_bac/chlpt-type.
DR InterPro; IPR047867; Ribosomal_uL22_bac/org-type.
DR InterPro; IPR018260; Ribosomal_uL22_CS.
DR InterPro; IPR036394; Ribosomal_uL22_sf.
DR NCBIfam; TIGR01044; rplV_bact; 1.
DR PANTHER; PTHR13501:SF10; 50S RIBOSOMAL PROTEIN L22, CHLOROPLASTIC; 1.
DR PANTHER; PTHR13501; CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED; 1.
DR Pfam; PF00237; Ribosomal_L22; 1.
DR SUPFAM; SSF54843; Ribosomal protein L22; 1.
DR PROSITE; PS00464; RIBOSOMAL_L22; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000313|EMBL:ADD30274.1};
KW Plastid {ECO:0000313|EMBL:ADD30274.1};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW Rule:MF_01331};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW Rule:MF_01331};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01331};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01331}.
SQ SEQUENCE 160 AA; 18611 MW; 4451AFD36D044FCB CRC64;
MFEKKQTDVY ALGQHIAMSA HKARRVIDQI RGRSYEETLM ILELMPYRAC YPIFKLVYSA
AANASYILGS NEANLIISKA EVNEGTAVKK LKPRARGRSY PIKRPTCHIT IIVKDMSLPE
YVTKNFLEWS KKPKWKKWKN KYTDVTYHDM YSNGGVWDKK
//