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Database: UniProt
Entry: D4M4J2_9FIRM
LinkDB: D4M4J2_9FIRM
Original site: D4M4J2_9FIRM 
ID   D4M4J2_9FIRM            Unreviewed;       450 AA.
AC   D4M4J2;
DT   18-MAY-2010, integrated into UniProtKB/TrEMBL.
DT   18-MAY-2010, sequence version 1.
DT   24-JAN-2024, entry version 62.
DE   SubName: Full=MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:CBL26154.1};
GN   ORFNames=RTO_15550 {ECO:0000313|EMBL:CBL26154.1};
OS   [Ruminococcus] torques L2-14.
OC   Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae;
OC   Mediterraneibacter.
OX   NCBI_TaxID=657313 {ECO:0000313|EMBL:CBL26154.1, ECO:0000313|Proteomes:UP000008956};
RN   [1] {ECO:0000313|EMBL:CBL26154.1, ECO:0000313|Proteomes:UP000008956}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=L2-14 {ECO:0000313|EMBL:CBL26154.1,
RC   ECO:0000313|Proteomes:UP000008956};
RG   metaHIT consortium -- http://www.metahit.eu/;
RA   Pajon A., Turner K., Parkhill J., Duncan S., Flint H.;
RT   "The genome sequence of Ruminococcus torques L2-14.";
RL   Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:CBL26154.1, ECO:0000313|Proteomes:UP000008956}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=L2-14 {ECO:0000313|EMBL:CBL26154.1,
RC   ECO:0000313|Proteomes:UP000008956};
RA   Pajon A.;
RL   Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000256|ARBA:ARBA00001966};
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DR   EMBL; FP929055; CBL26154.1; -; Genomic_DNA.
DR   RefSeq; WP_015528744.1; NC_021015.1.
DR   AlphaFoldDB; D4M4J2; -.
DR   STRING; 33039.ERS852502_00084; -.
DR   KEGG; rto:RTO_15550; -.
DR   PATRIC; fig|657313.3.peg.1358; -.
DR   HOGENOM; CLU_018697_1_0_9; -.
DR   Proteomes; UP000008956; Chromosome.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0035598; F:N6-threonylcarbomyladenosine methylthiotransferase activity; IEA:InterPro.
DR   CDD; cd01335; Radical_SAM; 1.
DR   Gene3D; 3.40.50.12160; Methylthiotransferase, N-terminal domain; 1.
DR   Gene3D; 3.80.30.20; tm_1862 like domain; 1.
DR   InterPro; IPR006638; Elp3/MiaA/NifB-like_rSAM.
DR   InterPro; IPR005839; Methylthiotransferase.
DR   InterPro; IPR020612; Methylthiotransferase_CS.
DR   InterPro; IPR013848; Methylthiotransferase_N.
DR   InterPro; IPR038135; Methylthiotransferase_N_sf.
DR   InterPro; IPR006467; MiaB-like_bact.
DR   InterPro; IPR007197; rSAM.
DR   InterPro; IPR023404; rSAM_horseshoe.
DR   InterPro; IPR034557; ThrcA_tRNA_MEthiotransferase.
DR   NCBIfam; TIGR01579; MiaB-like-C; 1.
DR   NCBIfam; TIGR00089; MiaB/RimO family radical SAM methylthiotransferase; 1.
DR   PANTHER; PTHR11918; RADICAL SAM PROTEINS; 1.
DR   PANTHER; PTHR11918:SF45; THREONYLCARBAMOYLADENOSINE TRNA METHYLTHIOTRANSFERASE; 1.
DR   Pfam; PF04055; Radical_SAM; 1.
DR   Pfam; PF00919; UPF0004; 1.
DR   SFLD; SFLDG01082; B12-binding_domain_containing; 1.
DR   SFLD; SFLDG01061; methylthiotransferase; 1.
DR   SFLD; SFLDF00295; threonylcarbamoyladenosine_tRN; 1.
DR   SMART; SM00729; Elp3; 1.
DR   SUPFAM; SSF102114; Radical SAM enzymes; 1.
DR   PROSITE; PS51449; MTTASE_N; 1.
DR   PROSITE; PS01278; MTTASE_RADICAL; 1.
DR   PROSITE; PS51918; RADICAL_SAM; 1.
PE   4: Predicted;
KW   4Fe-4S {ECO:0000256|ARBA:ARBA00022485};
KW   Iron {ECO:0000256|ARBA:ARBA00023004};
KW   Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          2..114
FT                   /note="MTTase N-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51449"
FT   DOMAIN          159..389
FT                   /note="Radical SAM core"
FT                   /evidence="ECO:0000259|PROSITE:PS51918"
SQ   SEQUENCE   450 AA;  51470 MW;  73FBAC63EA167C5F CRC64;
     MKKAALHNLG CKVNAYETEA MQEMLEKAGY EIVPFKEGAD LYVINTCTVT NIADRKSRQM
     LHRARKMNPD AVVVAAGCYV QAKEKEIQVD DCIDIVLGNN KKQNLIEALE EYERTHNADC
     NVTENEKNAK NQENDRKAEI KMEEIGKTKE YENLHLTKPG DHTRAYIKVQ DGCNQFCTYC
     IIPYARGRVR SRSMEDVLDE VRTLADNGYK EVVLTGIHLS SYGIDFDKEY HLLELIRAVH
     EIDGIERIRL GSLEPGIITE EFAEGIAKLP KMCPHFHLSL QSGCDATLKR MNRRYTSSEY
     AEKCELLRKY FPNPALTTDV IVGFPGETEE EFKESYDFVD SIDFYETHIF KYSRREGTKA
     AVMPDQVDEQ IKAKRSAQLI ELGEKKRAAY EQSFQGKEVE VLVEENLELN GKEVQTGHTK
     EYMKIALETN ENLKNSIVKV QIGKDSQIIH
//
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