ID D4ZJS7_SHEVD Unreviewed; 260 AA.
AC D4ZJS7;
DT 15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT 15-JUN-2010, sequence version 1.
DT 27-MAR-2024, entry version 78.
DE SubName: Full=AraC-type DNA-binding domain-containing protein {ECO:0000313|EMBL:BAJ01926.1};
GN OrderedLocusNames=SVI_1955 {ECO:0000313|EMBL:BAJ01926.1};
OS Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=637905 {ECO:0000313|EMBL:BAJ01926.1, ECO:0000313|Proteomes:UP000002350};
RN [1] {ECO:0000313|Proteomes:UP000002350}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 10179 / CIP 106290 / LMG 19151 / DSS12
RC {ECO:0000313|Proteomes:UP000002350};
RX PubMed=20458400; DOI=10.1039/c000396d;
RA Aono E., Baba T., Ara T., Nishi T., Nakamichi T., Inamoto E., Toyonaga H.,
RA Hasegawa M., Takai Y., Okumura Y., Baba M., Tomita M., Kato C., Oshima T.,
RA Nakasone K., Mori H.;
RT "Complete genome sequence and comparative analysis of Shewanella violacea,
RT a psychrophilic and piezophilic bacterium from deep sea floor sediments.";
RL Mol. Biosyst. 6:1216-1226(2010).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP011177; BAJ01926.1; -; Genomic_DNA.
DR RefSeq; WP_013051231.1; NC_014012.1.
DR AlphaFoldDB; D4ZJS7; -.
DR STRING; 637905.SVI_1955; -.
DR KEGG; svo:SVI_1955; -.
DR eggNOG; COG2207; Bacteria.
DR HOGENOM; CLU_000445_87_0_6; -.
DR OrthoDB; 5949386at2; -.
DR Proteomes; UP000002350; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd06124; cupin_NimR-like_N; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR InterPro; IPR003313; AraC-bd.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR PANTHER; PTHR11019; HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR; 1.
DR PANTHER; PTHR11019:SF199; HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR; 1.
DR Pfam; PF02311; AraC_binding; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF51182; RmlC-like cupins; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000313|EMBL:BAJ01926.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000002350}.
FT DOMAIN 161..258
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 260 AA; 29495 MW; 42951925182389B7 CRC64;
MSPDALFPEF DSDQYPQKVV SLKLRGGDRE CETPFHQHRK GQLVLATHGH VTCKIDDGIW
MVPTHCAVWI PSQVPHSNRI SPDAQICMLF IDPKIPNLPQ KSCTLSISPL VRELILHLTT
QIQDYKAQSA TAKLVDVLMH ELVKMPREQF DFPIPKEPRL NKIAQDLLAN PDNRETIAQW
AAKFAMSERT LARLVKQEVG VTFGRWRGQL HIVIALRELS SGYSVQRVSE DLGYESVSAF
ITFFKKTLGR PPKQYINGNT
//
