GenomeNet

Database: UniProt
Entry: D5EDD4_AMICL
LinkDB: D5EDD4_AMICL
Original site: D5EDD4_AMICL 
ID   D5EDD4_AMICL            Unreviewed;       277 AA.
AC   D5EDD4;
DT   15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT   15-JUN-2010, sequence version 1.
DT   24-JAN-2024, entry version 68.
DE   SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADE56566.1};
GN   OrderedLocusNames=Amico_0424 {ECO:0000313|EMBL:ADE56566.1};
OS   Aminobacterium colombiense (strain DSM 12261 / ALA-1).
OC   Bacteria; Synergistota; Synergistia; Synergistales; Aminobacteriaceae;
OC   Aminobacterium.
OX   NCBI_TaxID=572547 {ECO:0000313|EMBL:ADE56566.1, ECO:0000313|Proteomes:UP000002366};
RN   [1] {ECO:0000313|EMBL:ADE56566.1, ECO:0000313|Proteomes:UP000002366}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 12261 / ALA-1 {ECO:0000313|Proteomes:UP000002366};
RX   PubMed=21304712;
RA   Chertkov O., Sikorski J., Brambilla E., Lapidus A., Copeland A.,
RA   Glavina Del Rio T., Nolan M., Lucas S., Tice H., Cheng J.F., Han C.,
RA   Detter J.C., Bruce D., Tapia R., Goodwin L., Pitluck S., Liolios K.,
RA   Ivanova N., Mavromatis K., Ovchinnikova G., Pati A., Chen A.,
RA   Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Spring S.,
RA   Rohde M., Goker M., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P.,
RA   Kyrpides N.C., Klenk H.P.;
RT   "Complete genome sequence of Aminobacterium colombiense type strain (ALA-
RT   1).";
RL   Stand. Genomic Sci. 2:280-289(2010).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CP001997; ADE56566.1; -; Genomic_DNA.
DR   AlphaFoldDB; D5EDD4; -.
DR   STRING; 572547.Amico_0424; -.
DR   KEGG; aco:Amico_0424; -.
DR   eggNOG; COG1609; Bacteria.
DR   HOGENOM; CLU_1015401_0_0_0; -.
DR   OMA; GRLMINR; -.
DR   OrthoDB; 4810at2; -.
DR   Proteomes; UP000002366; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd01392; HTH_LacI; 1.
DR   Gene3D; 3.40.50.2300; -; 1.
DR   Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR   InterPro; IPR000843; HTH_LacI.
DR   InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR   InterPro; IPR028082; Peripla_BP_I.
DR   PANTHER; PTHR30146:SF110; HTH-TYPE TRANSCRIPTIONAL REPRESSOR CYTR; 1.
DR   PANTHER; PTHR30146; LACI-RELATED TRANSCRIPTIONAL REPRESSOR; 1.
DR   Pfam; PF00356; LacI; 1.
DR   SMART; SM00354; HTH_LACI; 1.
DR   SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR   SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR   PROSITE; PS50932; HTH_LACI_2; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002366};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          3..57
FT                   /note="HTH lacI-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50932"
SQ   SEQUENCE   277 AA;  29589 MW;  AB2444E4C8B994A9 CRC64;
     MKVKMEDVAK LANVNKATVS RALKGDSRIS ASTRERVWKA AKALGYQPDA VARGLSSNRT
     GLLGVVFVDL SQPWVGSFLS GLDRVASKQS YSLLVKCSGQ GPSQKNVVAR DLLSRNVDGI
     IWIAGAVPDL SFDGPLVAVG SENPRGFSVL IDVERGAQKL QKIAKGRVCE VRSGSAPFFR
     DIASFLKGPS LKTLPPLYVV DSSHDIPISG GGENVVLCGY PNVARLLKSY CLDWPAFELG
     AIAGRLSLNA IQEKGVRPEK VMVVPPLYSP EGDIVSL
//
DBGET integrated database retrieval system