ID D5LMI1_9GAMM Unreviewed; 405 AA.
AC D5LMI1;
DT 15-JUN-2010, integrated into UniProtKB/TrEMBL.
DT 15-JUN-2010, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE RecName: Full=DNA gyrase subunit B {ECO:0000256|ARBA:ARBA00019166};
DE EC=5.6.2.2 {ECO:0000256|ARBA:ARBA00012895};
DE Flags: Fragment;
OS Shewanella seohaensis.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=755175 {ECO:0000313|EMBL:ADF49629.1};
RN [1] {ECO:0000313|EMBL:ADF49629.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=S7-3 {ECO:0000313|EMBL:ADF49629.1};
RX PubMed=22437441; DOI=10.1007/s10482-012-9722-2;
RA Yoon J.H., Park S., Jung Y.T., Lee J.S.;
RT "Shewanella seohaensis sp. nov., isolated from a tidal flat sediment.";
RL Antonie Van Leeuwenhoek 102:149-156(2012).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP-dependent breakage, passage and rejoining of double-
CC stranded DNA.; EC=5.6.2.2; Evidence={ECO:0000256|ARBA:ARBA00000185};
CC -!- SIMILARITY: Belongs to the type II topoisomerase GyrB family.
CC {ECO:0000256|ARBA:ARBA00010708}.
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DR EMBL; GU944673; ADF49629.1; -; Genomic_DNA.
DR AlphaFoldDB; D5LMI1; -.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003918; F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; IEA:UniProtKB-EC.
DR GO; GO:0006265; P:DNA topological change; IEA:InterPro.
DR CDD; cd00822; TopoII_Trans_DNA_gyrase; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.40.50.670; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR001241; Topo_IIA.
DR InterPro; IPR013760; Topo_IIA-like_dom_sf.
DR InterPro; IPR000565; Topo_IIA_B.
DR InterPro; IPR013759; Topo_IIA_B_C.
DR InterPro; IPR013506; Topo_IIA_bsu_dom2.
DR InterPro; IPR018522; TopoIIA_CS.
DR InterPro; IPR006171; TOPRIM_domain.
DR PANTHER; PTHR45866:SF1; DNA GYRASE SUBUNIT B, MITOCHONDRIAL; 1.
DR PANTHER; PTHR45866; DNA GYRASE/TOPOISOMERASE SUBUNIT B; 1.
DR Pfam; PF00204; DNA_gyraseB; 1.
DR Pfam; PF01751; Toprim; 1.
DR PRINTS; PR01159; DNAGYRASEB.
DR PRINTS; PR00418; TPI2FAMILY.
DR SMART; SM00433; TOP2c; 1.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF56719; Type II DNA topoisomerase; 1.
DR PROSITE; PS00177; TOPOISOMERASE_II; 1.
DR PROSITE; PS50880; TOPRIM; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Isomerase {ECO:0000256|ARBA:ARBA00023235};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Topoisomerase {ECO:0000256|ARBA:ARBA00023029}.
FT DOMAIN 320..405
FT /note="Toprim"
FT /evidence="ECO:0000259|PROSITE:PS50880"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ADF49629.1"
FT NON_TER 405
FT /evidence="ECO:0000313|EMBL:ADF49629.1"
SQ SEQUENCE 405 AA; 44886 MW; 79617C04D34C68EB CRC64;
HAGGKFDDNS YKVSGGLHGV GVSVVNALSK KLQLTIRREG KVHEQFYTHG VPDEPIKVIG
DATKTGTEIR FWPSEETFSD VEFHFEILAK RVRELSFLNS GVGIRLVDER DNKNEFFKYE
GGISAFVDYL NRNKTPVNKD VFHFMQERED GITVEVAMQW NDSYQESIFC FTNNIPQRDG
GTHLAGFRSA LTRNLNNYME NEGYNKKGKT NATGDDAREG LTAVISVKVP DPKFSSQTKD
KLVSSEVKAA VEQTMGEKLN DYLLENPADA KLIVGKIVDA ARAREAARKA REMTRRKGAL
DLGGLPGKLA DCQEKDPGLS EIYIVEGDSA GGSAKQGRNR KNQAILPLKG KILNVEKARF
DKMLSSQEVA TLITALGCGI GRDEYNPDKT RYHNIIIMTD ADVDG
//
