ID D5Q4S4_CLODI Unreviewed; 398 AA.
AC D5Q4S4;
DT 13-JUL-2010, integrated into UniProtKB/TrEMBL.
DT 13-JUL-2010, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE SubName: Full=DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFH07130.1};
GN ORFNames=HMPREF0220_1906 {ECO:0000313|EMBL:EFH07130.1};
OS Clostridioides difficile NAP08.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae;
OC Clostridioides.
OX NCBI_TaxID=525259 {ECO:0000313|EMBL:EFH07130.1, ECO:0000313|Proteomes:UP000003227};
RN [1] {ECO:0000313|EMBL:EFH07130.1, ECO:0000313|Proteomes:UP000003227}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NAP08 {ECO:0000313|EMBL:EFH07130.1,
RC ECO:0000313|Proteomes:UP000003227};
RA Qin X., Bachman B., Battles P., Bell A., Bess C., Bickham C., Chaboub L.,
RA Chen D., Coyle M., Deiros D.R., Dinh H., Forbes L., Fowler G.,
RA Francisco L., Fu Q., Gubbala S., Hale W., Han Y., Hemphill L.,
RA Highlander S.K., Hirani K., Hogues M., Jackson L., Jakkamsetti A.,
RA Javaid M., Jiang H., Korchina V., Kovar C., Lara F., Lee S., Mata R.,
RA Mathew T., Moen C., Morales K., Munidasa M., Nazareth L., Ngo R.,
RA Nguyen L., Okwuonu G., Ongeri F., Patil S., Petrosino J., Pham C., Pham P.,
RA Pu L.-L., Puazo M., Raj R., Reid J., Rouhana J., Saada N., Shang Y.,
RA Simmons D., Thornton R., Warren J., Weissenberger G., Zhang J., Zhang L.,
RA Zhou C., Zhu D., Muzny D., Worley K., Gibbs R.;
RL Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the plasmid replication initiation factor
CC family. {ECO:0000256|ARBA:ARBA00008374}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFH07130.1}.
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DR EMBL; ADNX01000043; EFH07130.1; -; Genomic_DNA.
DR RefSeq; WP_003423038.1; NZ_GG770710.1.
DR AlphaFoldDB; D5Q4S4; -.
DR HOGENOM; CLU_037938_0_0_9; -.
DR Proteomes; UP000003227; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR048093; MobT.
DR InterPro; IPR003491; REP-like_C.
DR InterPro; IPR040819; Rol_Rep_N.
DR NCBIfam; NF041493; MobT; 1.
DR Pfam; PF01381; HTH_3; 1.
DR Pfam; PF02486; Rep_trans; 1.
DR Pfam; PF18106; Rol_Rep_N; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000313|EMBL:EFH07130.1}.
FT DOMAIN 9..55
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 398 AA; 47201 MW; 02F854FEB71D53F1 CRC64;
MVLNEEQWIK ELREKRIAYG ISQGRLAVAS GITREYLNKI ESGKMKPSKE LLETLHKELA
RFNPEAPLTM LFDYVKIRFP TLDIQHIIKD ILKLNINYML HEDYGHYSYT EHYSLGDIFI
YTSADEEKGV LLELKGRGCR QFESYLLAQQ RSWYDFLMDA LIDGGVMKRI DLAINDHTGI
LDIPELAEKC RKREYIGKSR SYKFYQSGEL IKHSEDDREY MGRTLYLGSL KSDVYFCIYE
KDYEQYVKLG TPLEEADIIN RFEIRLRNER AYYAVRDLLT YYDAEQTAFS IINQYVRFVD
EEPDKRKNDW KLNDRWAWFI GDNRQSLKLT TKPEPYTLDR TLRWVQRQVA PTLKMLKKID
KGNGTDYMET IEQQAKLTEK HEMIIKQQTT PAKDLVEI
//
