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Database: UniProt
Entry: D6V1P0_9BRAD
LinkDB: D6V1P0_9BRAD
Original site: D6V1P0_9BRAD 
ID   D6V1P0_9BRAD            Unreviewed;       311 AA.
AC   D6V1P0;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 56.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI53620.1};
GN   ORFNames=AfiDRAFT_1607 {ECO:0000313|EMBL:EFI53620.1};
OS   Afipia sp. 1NLS2.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Nitrobacteraceae; Afipia.
OX   NCBI_TaxID=666684 {ECO:0000313|EMBL:EFI53620.1, ECO:0000313|Proteomes:UP000004041};
RN   [1] {ECO:0000313|EMBL:EFI53620.1, ECO:0000313|Proteomes:UP000004041}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=1NLS2 {ECO:0000313|EMBL:EFI53620.1,
RC   ECO:0000313|Proteomes:UP000004041};
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA   Pitluck S., Land M.L., Hauser L., Chang Y.-J., Jeffries C., Prakah O.,
RA   Elkins J.G., Brown S.D., Palumbo A.V., Hemme C., Zhou J., Watson D.B.,
RA   Jardine P.M., Kostka J.E., Green S.J., Woyke T.J.;
RT   "The draft genome of Afipia sp. 1NLS2.";
RL   Submitted (MAY-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: NodD regulates the expression of the nodABCFE genes which
CC       encode other nodulation proteins. NodD is also a negative regulator of
CC       its own expression. Binds flavonoids as inducers.
CC       {ECO:0000256|ARBA:ARBA00003502}.
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|ARBA:ARBA00009437}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EFI53620.1}.
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DR   EMBL; ADVZ01000001; EFI53620.1; -; Genomic_DNA.
DR   RefSeq; WP_009338691.1; NZ_ADVZ01000001.1.
DR   AlphaFoldDB; D6V1P0; -.
DR   eggNOG; COG0583; Bacteria.
DR   Proteomes; UP000004041; Unassembled WGS sequence.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   Gene3D; 3.40.190.290; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   PANTHER; PTHR30427; TRANSCRIPTIONAL ACTIVATOR PROTEIN LYSR; 1.
DR   PANTHER; PTHR30427:SF1; TRANSCRIPTIONAL ACTIVATOR PROTEIN LYSR; 1.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   PRINTS; PR00039; HTHLYSR.
DR   SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR   SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
KW   Activator {ECO:0000256|ARBA:ARBA00023159};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          1..58
FT                   /note="HTH lysR-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50931"
SQ   SEQUENCE   311 AA;  34652 MW;  02FF76696FFA7996 CRC64;
     MNIKALKAFR LIVINGSLAT AAQSLHLSQP AVSRLISLLE HEAKLQLFYR TRRRLTLTPE
     GEAFYRQAEH LLAGFDEIPR IIEDIKAKTG GNFRLVTAPR IGQGLVSPAL ALMQKEAPGV
     RCIVDIQSRF DLENRIGTRR YDLGIVSLPV SHSLIEIDNK PLMRVRAEAL LPEDHPLAEK
     EQLTASDLAP YPMLGLWPNQ IWRQQVDDFF RSGGAVPSYT VETRSSLMAC QMVRDGAGIA
     VLDRVCAQAI DLKGLTLRPI EPARWISFGC IYQRGATLSP HALHFLDCLK RIVAQLRARG
     PDYANSIEAL D
//
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