GenomeNet

Database: UniProt
Entry: D6WYF4_TRICA
LinkDB: D6WYF4_TRICA
Original site: D6WYF4_TRICA 
ID   D6WYF4_TRICA            Unreviewed;      1335 AA.
AC   D6WYF4;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   11-MAY-2016, sequence version 2.
DT   27-MAR-2024, entry version 66.
DE   RecName: Full=UBA domain-containing protein {ECO:0000259|PROSITE:PS50030};
GN   Name=AUGUSTUS-3.0.2_06679 {ECO:0000313|EMBL:EFA08972.2};
GN   ORFNames=TcasGA2_TC006679 {ECO:0000313|EMBL:EFA08972.2};
OS   Tribolium castaneum (Red flour beetle).
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia;
OC   Tenebrionidae; Tenebrionidae incertae sedis; Tribolium.
OX   NCBI_TaxID=7070 {ECO:0000313|EMBL:EFA08972.2, ECO:0000313|Proteomes:UP000007266};
RN   [1] {ECO:0000313|EMBL:EFA08972.2, ECO:0000313|Proteomes:UP000007266}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Georgia GA2 {ECO:0000313|EMBL:EFA08972.2,
RC   ECO:0000313|Proteomes:UP000007266};
RX   PubMed=18362917; DOI=10.1038/nature06784;
RG   Tribolium Genome Sequencing Consortium;
RA   Richards S., Gibbs R.A., Weinstock G.M., Brown S.J., Denell R.,
RA   Beeman R.W., Gibbs R., Beeman R.W., Brown S.J., Bucher G., Friedrich M.,
RA   Grimmelikhuijzen C.J., Klingler M., Lorenzen M., Richards S., Roth S.,
RA   Schroder R., Tautz D., Zdobnov E.M., Muzny D., Gibbs R.A., Weinstock G.M.,
RA   Attaway T., Bell S., Buhay C.J., Chandrabose M.N., Chavez D.,
RA   Clerk-Blankenburg K.P., Cree A., Dao M., Davis C., Chacko J., Dinh H.,
RA   Dugan-Rocha S., Fowler G., Garner T.T., Garnes J., Gnirke A., Hawes A.,
RA   Hernandez J., Hines S., Holder M., Hume J., Jhangiani S.N., Joshi V.,
RA   Khan Z.M., Jackson L., Kovar C., Kowis A., Lee S., Lewis L.R., Margolis J.,
RA   Morgan M., Nazareth L.V., Nguyen N., Okwuonu G., Parker D., Richards S.,
RA   Ruiz S.J., Santibanez J., Savard J., Scherer S.E., Schneider B.,
RA   Sodergren E., Tautz D., Vattahil S., Villasana D., White C.S., Wright R.,
RA   Park Y., Beeman R.W., Lord J., Oppert B., Lorenzen M., Brown S., Wang L.,
RA   Savard J., Tautz D., Richards S., Weinstock G., Gibbs R.A., Liu Y.,
RA   Worley K., Weinstock G., Elsik C.G., Reese J.T., Elhaik E., Landan G.,
RA   Graur D., Arensburger P., Atkinson P., Beeman R.W., Beidler J., Brown S.J.,
RA   Demuth J.P., Drury D.W., Du Y.Z., Fujiwara H., Lorenzen M., Maselli V.,
RA   Osanai M., Park Y., Robertson H.M., Tu Z., Wang J.J., Wang S., Richards S.,
RA   Song H., Zhang L., Sodergren E., Werner D., Stanke M., Morgenstern B.,
RA   Solovyev V., Kosarev P., Brown G., Chen H.C., Ermolaeva O., Hlavina W.,
RA   Kapustin Y., Kiryutin B., Kitts P., Maglott D., Pruitt K., Sapojnikov V.,
RA   Souvorov A., Mackey A.J., Waterhouse R.M., Wyder S., Zdobnov E.M.,
RA   Zdobnov E.M., Wyder S., Kriventseva E.V., Kadowaki T., Bork P., Aranda M.,
RA   Bao R., Beermann A., Berns N., Bolognesi R., Bonneton F., Bopp D.,
RA   Brown S.J., Bucher G., Butts T., Chaumot A., Denell R.E., Ferrier D.E.,
RA   Friedrich M., Gordon C.M., Jindra M., Klingler M., Lan Q., Lattorff H.M.,
RA   Laudet V., von Levetsow C., Liu Z., Lutz R., Lynch J.A., da Fonseca R.N.,
RA   Posnien N., Reuter R., Roth S., Savard J., Schinko J.B., Schmitt C.,
RA   Schoppmeier M., Schroder R., Shippy T.D., Simonnet F., Marques-Souza H.,
RA   Tautz D., Tomoyasu Y., Trauner J., Van der Zee M., Vervoort M.,
RA   Wittkopp N., Wimmer E.A., Yang X., Jones A.K., Sattelle D.B., Ebert P.R.,
RA   Nelson D., Scott J.G., Beeman R.W., Muthukrishnan S., Kramer K.J.,
RA   Arakane Y., Beeman R.W., Zhu Q., Hogenkamp D., Dixit R., Oppert B.,
RA   Jiang H., Zou Z., Marshall J., Elpidina E., Vinokurov K., Oppert C.,
RA   Zou Z., Evans J., Lu Z., Zhao P., Sumathipala N., Altincicek B.,
RA   Vilcinskas A., Williams M., Hultmark D., Hetru C., Jiang H.,
RA   Grimmelikhuijzen C.J., Hauser F., Cazzamali G., Williamson M., Park Y.,
RA   Li B., Tanaka Y., Predel R., Neupert S., Schachtner J., Verleyen P.,
RA   Raible F., Bork P., Friedrich M., Walden K.K., Robertson H.M., Angeli S.,
RA   Foret S., Bucher G., Schuetz S., Maleszka R., Wimmer E.A., Beeman R.W.,
RA   Lorenzen M., Tomoyasu Y., Miller S.C., Grossmann D., Bucher G.;
RT   "The genome of the model beetle and pest Tribolium castaneum.";
RL   Nature 452:949-955(2008).
RN   [2] {ECO:0000313|EMBL:EFA08972.2, ECO:0000313|Proteomes:UP000007266}
RP   GENOME REANNOTATION.
RC   STRAIN=Georgia GA2 {ECO:0000313|EMBL:EFA08972.2,
RC   ECO:0000313|Proteomes:UP000007266};
RX   PubMed=19820115; DOI=10.1093/nar/gkp807;
RA   Kim H.S., Murphy T., Xia J., Caragea D., Park Y., Beeman R.W.,
RA   Lorenzen M.D., Butcher S., Manak J.R., Brown S.J.;
RT   "BeetleBase in 2010: revisions to provide comprehensive genomic information
RT   for Tribolium castaneum.";
RL   Nucleic Acids Res. 38:D437-D442(2010).
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DR   EMBL; KQ971362; EFA08972.2; -; Genomic_DNA.
DR   RefSeq; XP_008197256.1; XM_008199034.2.
DR   RefSeq; XP_008197257.1; XM_008199035.2.
DR   STRING; 7070.D6WYF4; -.
DR   EnsemblMetazoa; TC006679_001; TC006679_001; TC006679.
DR   GeneID; 661812; -.
DR   KEGG; tca:661812; -.
DR   eggNOG; ENOG502QWFQ; Eukaryota.
DR   HOGENOM; CLU_001298_0_0_1; -.
DR   InParanoid; D6WYF4; -.
DR   OMA; VSWPPEF; -.
DR   OrthoDB; 5407035at2759; -.
DR   Proteomes; UP000007266; Linkage group 8.
DR   GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR   GO; GO:0000932; C:P-body; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0035278; P:miRNA-mediated gene silencing by inhibition of translation; IEA:InterPro.
DR   GO; GO:0035195; P:miRNA-mediated post-transcriptional gene silencing; IBA:GO_Central.
DR   GO; GO:0060213; P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; IBA:GO_Central.
DR   CDD; cd12435; RRM_GW182_like; 1.
DR   CDD; cd14284; UBA_GAWKY; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 1.
DR   InterPro; IPR041971; Gawky_UBA.
DR   InterPro; IPR026805; GW182_M_dom.
DR   InterPro; IPR033503; GW182_RRM.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR015940; UBA.
DR   InterPro; IPR009060; UBA-like_sf.
DR   PANTHER; PTHR13020:SF25; PROTEIN GAWKY; 1.
DR   PANTHER; PTHR13020; TRINUCLEOTIDE REPEAT-CONTAINING GENE 6; 1.
DR   Pfam; PF12938; M_domain; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   SMART; SM00360; RRM; 1.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR   SUPFAM; SSF46934; UBA-like; 1.
DR   PROSITE; PS50030; UBA; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000007266};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW   Translation regulation {ECO:0000256|ARBA:ARBA00022845}.
FT   DOMAIN          665..705
FT                   /note="UBA"
FT                   /evidence="ECO:0000259|PROSITE:PS50030"
FT   REGION          159..305
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          322..482
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          540..577
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          957..1058
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1075..1130
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1271..1335
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        177..305
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        323..337
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        407..425
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        461..479
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        554..577
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        969..993
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1011..1028
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1271..1324
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1335 AA;  142600 MW;  5500E054B1D92B55 CRC64;
     MRAPTPSEPK STFPTYQVPQ VSAMRGSAPP VQVARAAWGG RADPPSQPIA AKGATSVING
     SSCRLNGNSN IRMQSVTENC LLNSVTVPKI QRKDHCKVAH NNSDKLVCKF GALPLGRDIP
     NQKSDDLEVL DLNALKNLTS CDNNDEHCDD DEMCREPHVQ RTSDNHTPPL RLRGGGESSL
     STGTSGWGTP PSQQASNNNA NTSSGWGTAN PANQNNTGTQ QWNNNANRPP TSSQGPTQDA
     NKANSNLNSN GQQQTPASQP NNSSWGQPGA KPPTTNNGPQ PTTSTSSAKP PNPTAQPNTT
     TSTKQQLEQL NNMREAIFSQ DGWGGQHVNQ DTNWDIPGSP EPSMKMDGSA PPPWKPAINN
     GTELWEANLR NGGQPPPQPQ QKTPWGHTPS TNIGGTWGED DDADSSNVWT GVPSGQQQWG
     NTANSGGMWG GPKKESEWGA AAGNPGWGDP RTATDPRATG GIDPRDMRPD LRDMRAGSSD
     PMRLLDPREQ MRLAGSDMRG DPRGITGRLN GAGAADAFWG QAGPHTGTQH IHHQNKMPVG
     PGNGAGWEEP SPPTQRRNMP NYDDGTSLWG NPQQGSHWKD LPTGASMGRG STAGPPGMAQ
     SRIKPDGSVW CHGRNGSWDE TGPGWDESVG GWNKQKMAGT HLWGDNEIDW GHNKGPKQNL
     TKEMIWNSKC FRMLMDMGYK KEDVETALRR GDMNYEDALE ILGSRNPDGW RNRHDDHYDH
     QQFPGQRFPS GPPGQMSFPQ GNNAPNLLNN MNSSGGPNNS LINNISPAGV HKMLTQGGGG
     SQGFGAVSAA GRNLQPQSQP STQQLRMLVQ QIQMAVQAGY LNHQILNQPL APQTLILLNQ
     LLQQIKTLQQ LMTQQSVAQS QCINGKPNSA LLQCSVLITK TKQQITNLQN QIAAQQAIYV
     KQQNHGSIGG GQSDLFKTAA PMHDSINALQ SNFADLGIKD QVNQSQSRLN QWINKDKEEG
     GEFSRAPGSS SKPLATSPNM NPLGLTQPDG PWSSGRTGDG GWPESGGGDS SNDGKDAQWP
     TPTQPSLSDL VPEFEPGKPW KGNQIKSIED DPSITPGSVV RSSLSIATIK DTELFQMNPN
     NKSPPAGDTI QPLSLSSSTW SFNPPSSTSS AFTSPQNKLP SSKSGLGELN PTTAVTSELW
     AAPKSRGPPP GLSAKGGALV NGWSSAASWG GGQRGSGSWG GSPWLLLRNL TAQIDGSTLR
     TLCMQHGPLQ SFHLYLHQGF ALAKYSTREE ATKAQTALNN CVLGNTTILA ENPSEWDANA
     LLQQVASQQS SSGAWRGSTK QPSTGSDTWS TGWSNSQSSA SLWGSTTLDT TDPARATPSS
     LNSFLPGDLL GGESM
//
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