ID D7A4E8_STAND Unreviewed; 759 AA.
AC D7A4E8;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE SubName: Full=Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:ADH89811.1};
GN OrderedLocusNames=Snov_2516 {ECO:0000313|EMBL:ADH89811.1};
OS Starkeya novella (strain ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM
OS 12100 / NBRC 12443 / NCIMB 10456).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Xanthobacteraceae; Ancylobacter.
OX NCBI_TaxID=639283 {ECO:0000313|EMBL:ADH89811.1, ECO:0000313|Proteomes:UP000006633};
RN [1] {ECO:0000313|EMBL:ADH89811.1, ECO:0000313|Proteomes:UP000006633}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 8093 / DSM 506 / JCM 20403 / CCM 1077 / IAM 12100 / NBRC
RC 12443 / NCIMB 10456 {ECO:0000313|Proteomes:UP000006633};
RX PubMed=23450099; DOI=10.4056/sigs.3006378;
RA Kappler U., Davenport K., Beatson S., Lucas S., Lapidus A., Copeland A.,
RA Berry K.W., Glavina Del Rio T., Hammon N., Dalin E., Tice H., Pitluck S.,
RA Richardson P., Bruce D., Goodwin L.A., Han C., Tapia R., Detter J.C.,
RA Chang Y.J., Jeffries C.D., Land M., Hauser L., Kyrpides N.C., Goker M.,
RA Ivanova N., Klenk H.P., Woyke T.;
RT "Complete genome sequence of the facultatively chemolithoautotrophic and
RT methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC
RT 8093(T)).";
RL Stand. Genomic Sci. 7:44-58(2012).
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DR EMBL; CP002026; ADH89811.1; -; Genomic_DNA.
DR RefSeq; WP_013167315.1; NC_014217.1.
DR AlphaFoldDB; D7A4E8; -.
DR STRING; 639283.Snov_2516; -.
DR KEGG; sno:Snov_2516; -.
DR eggNOG; COG2203; Bacteria.
DR eggNOG; COG5001; Bacteria.
DR HOGENOM; CLU_000445_70_20_5; -.
DR OrthoDB; 9814202at2; -.
DR Proteomes; UP000006633; Chromosome.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01948; EAL; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR33121; CYCLIC DI-GMP PHOSPHODIESTERASE PDEF; 1.
DR PANTHER; PTHR33121:SF71; CYCLIC DI-GMP PHOSPHODIESTERASE PDEF; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF00989; PAS; 1.
DR SMART; SM00052; EAL; 1.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 1.
PE 4: Predicted;
FT DOMAIN 185..256
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 263..313
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 339..463
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 472..732
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
SQ SEQUENCE 759 AA; 82772 MW; 0257CF6B62F619E4 CRC64;
MSEDAGVSDR LLSVMSTFIA ELNGPLDWRR ALAGLMPRLA AELELSRVAL FEVHTSPGAG
LGVTCRVDWA RVGLASLADN THPPVRPVDA DARQRDWAER RTRGEVIEGR TEDLDGYLGA
FFRAAGIVSF YTVPVMVEGR WWGHFCLSSD DRDRAWSKEE RTAFKACAGL IALAVERSRA
GRALSEATRL AMLSAALDAI VTVDEAGQIV DFNPAAEAMF HYRREQVIGR SLGETIVPPS
LRSAHLSGMT RYMSGAAPHI LGRRIEIQAC TSEGDVFPVE LAITEIRTEH RRLFTAYLRD
ISDRVRANEA LERLAYTDTV TELPNRAGLV RLVDAEGREP AGALVMRLPD LAILSASLGE
DFIGPLMVTL ANRLRAHLPA DAQLARTGEC ELALILADHG EPEALGAEIE ALLHAPLESE
GRRFYLRAEI GIATGPGRVE QILRNAEMAS RANRSGRWRV FDESLRADHQ HRLTLENALR
EAVTNRSDEL YPVFQPMVDS RTGKVAGFEA LARWEHPRIG PVPPADFIPL AEAVGLMDRL
GDLIMDRAVK ACARWNAGRR ASGAPLRYVS VNLAAPQLAA PDLATRIAAI LARHGVRGEE
VRLELTESAL LAQPAAAANV LQQLKALGCS TAIDDFGTGY SSFSYLQHLP VDVLKIDRSF
MPDLAQEPRA RKIVAVMVDL AHALGMSVVA EGIELPETLR EVEAIGCDFV QGFLTGRPMR
FEDALVHPDG ITWPSSQLRN DAAGKVASAV AADTRRSAP
//
