ID D7KDW6_ARALL Unreviewed; 471 AA.
AC D7KDW6;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 52.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:EFH67086.1};
GN ORFNames=ARALYDRAFT_890497 {ECO:0000313|EMBL:EFH67086.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; GL348713; EFH67086.1; -; Genomic_DNA.
DR RefSeq; XP_002890827.1; XM_002890781.1.
DR AlphaFoldDB; D7KDW6; -.
DR STRING; 81972.D7KDW6; -.
DR EnsemblPlants; scaffold_103291.1; scaffold_103291.1; scaffold_103291.1.
DR GeneID; 9329637; -.
DR Gramene; scaffold_103291.1; scaffold_103291.1; scaffold_103291.1.
DR KEGG; aly:9329637; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_1_1; -.
DR OrthoDB; 674948at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01535; PPR; 3.
DR PROSITE; PS51375; PPR; 2.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 149..179
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 180..214
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 379..471
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 471 AA; 53918 MW; F9B71361114609F5 CRC64;
MVRLWCGKLK LSKPFLALAT QSRSRWFSSR GAPSHQHDSL TYYGRTEIIN RLERYITERT
WTQNPIVGQY KTTVSPSVAQ NVTIETFDSL CNQGNWREAV EVLDYLENKG FAMDLIRLLR
LAKICGEPEA LEAARVVHEC IIALVSPCDV GSRNAIIKMY SCCGSVDHAL KVFDEMPKRN
SETWCVMMTC FVNNGFGEEA INLFTRFKEE GNKPDGEIFN QVLSTCTLTG DLKEGSLQFE
AMNREYGIIP SMEHYHSVTK MFATSGHLDE ALNFVERMPM EPSVDVWETL MNLSRVHGDV
ELGDRCAELV EKLDATRLDK VSSAGLVVTK ASDNVKKEPS NRSEPYWCYN FRPVDTSHPQ
MNIIYETLMS LRSQMKEMGY VPDTRFYRTL IMVMGNKEQV FGYREEIAVV ESLLKSKPRS
SITLITNVRI VGDCHNMMKL MSVITGRDLF KRDAQRYHLF KNGVCRCNDR W
//