ID D7KJF2_ARALL Unreviewed; 562 AA.
AC D7KJF2;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:EFH67339.1};
GN ORFNames=ARALYDRAFT_313929 {ECO:0000313|EMBL:EFH67339.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; GL348713; EFH67339.1; -; Genomic_DNA.
DR RefSeq; XP_002891080.1; XM_002891034.1.
DR AlphaFoldDB; D7KJF2; -.
DR EnsemblPlants; fgenesh1_pm.C_scaffold_1002709; fgenesh1_pm.C_scaffold_1002709; fgenesh1_pm.C_scaffold_1002709.
DR Gramene; fgenesh1_pm.C_scaffold_1002709; fgenesh1_pm.C_scaffold_1002709; fgenesh1_pm.C_scaffold_1002709.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_1_1; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR24015:SF1672; OS06G0506100 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 4.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 142..172
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 173..207
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 276..310
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 311..345
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 490..527
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 562 AA; 62824 MW; CD0C328C16C207DD CRC64;
MARVYMETMI QNCVTFSQIK QLQSHFLTAG HFQSSFLRSR LLERCAISPF GDLSFAVKIF
RHIPKPLTND WNAIIRGFAG SSHPSLAFSW YRSMLQRSSS SALCRVDALT CSFTLKACAR
ALCSSAMVQI HCQISRRGFS ADALLCTTLL DAYSKNGDLI SALKLFDEMS VRDVASWNAL
IAGLVAGNRA SEALELYKRM EMEGIRRSEV TVVAALGACS HLGDVKEGEK ILHGYIKDEK
LDHNVIVSNA VIDMYSKCGF VDKAFQVFEQ FTGKKSVVTW NTMITGFSVH GEAHRALEIF
EKLEHNGIKP DDVSYLAALT ACRHTGLVEY GISIFNNMAC NGVEPNMKHY GCVVDLLSRA
GRLREAHDII CSMSMVPDPV LWQSLLGASE IHNNVEMAEI ASRKIKEMGV NNDGDFVLLS
NVYAAQGRWK DVGLVRDDME SKQVKKVPGI SYIEAKGTIH QFHNSDKSHE QWREIYEKID
EIRFKIREDG YVAQTGLVLH DIGEEEKENA LCYHSEKLAV AYGLMMMDGA DEESPFDFIG
SKMVLALAEI FGNVTKLRGW QF
//
