ID D7KNF9_ARALL Unreviewed; 1134 AA.
AC D7KNF9;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 62.
DE SubName: Full=F28C11.9 {ECO:0000313|EMBL:EFH66843.1};
GN ORFNames=ARALYDRAFT_313215 {ECO:0000313|EMBL:EFH66843.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 28 family.
CC {ECO:0000256|ARBA:ARBA00008834, ECO:0000256|RuleBase:RU361169}.
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DR EMBL; GL348713; EFH66843.1; -; Genomic_DNA.
DR RefSeq; XP_002890584.1; XM_002890538.1.
DR AlphaFoldDB; D7KNF9; -.
DR EnsemblPlants; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995.
DR Gramene; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_008988_0_0_1; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0004650; F:polygalacturonase activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 2.160.20.10; Single-stranded right-handed beta-helix, Pectin lyase-like; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR000743; Glyco_hydro_28.
DR InterPro; IPR012334; Pectin_lyas_fold.
DR InterPro; IPR011050; Pectin_lyase_fold/virulence.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF00295; Glyco_hydro_28; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF51126; Pectin lyase-like; 1.
DR PROSITE; PS00502; POLYGALACTURONASE; 1.
DR PROSITE; PS51375; PPR; 3.
PE 3: Inferred from homology;
KW Glycosidase {ECO:0000256|ARBA:ARBA00023295, ECO:0000256|RuleBase:RU361169};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU361169};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 76..110
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 279..313
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 484..518
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT ACT_SITE 943
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU10052"
SQ SEQUENCE 1134 AA; 125325 MW; E4D45AC0146258BC CRC64;
MRGPQALYFL RRTTTLAQHL CPLAPLIVTP RMEFSSFLEE NPSDVVYTHN RKIDELIKSG
NLVSAHEVFD GMSVRDVVTY NLLISGNSRN GCSLRAIEIY AEMVSCGLRE SASTFPSVLS
VCSDELFCRE GIQVHCRVIS LGFGCNMFVR SALVGLYASF WLFDVALKLF DEMPERNLAV
CNLLLKCFCE TGESKRLFGV YCRMELEGVA KNGLTYCYLL RGCSNDQLLY VGKQLHSLVI
KSGWDISNIF VANALVDYYS ACGDLSGSIK SFNVVPEKDV ISWNSIVSVC ADYGSVLDSL
GLFSKMQFWG KRPSIRSFMS FLNVCSRNSD IQSGKQIHCY VLKMGFDVSS LLVQSSLIDM
YGKCNEIESS VLAYQSLPCL TLECCNSLMT SLMHCGITKD IIEMFGLMVD EGTGIDEVTL
STVLKALSLS LPESLHSCTL VHCCAIKSGY AADVAVSCSL IDTYSKSGQN EVSRKVFDEL
DSPNIFCLTS IINGYARNGM GRDCVEMLRE MDQKNLIPDE VTILSVLSGC SHSGLVEEGE
LIFDSLELKY GISPGRKLYA CLVDLLGRAG LVEKAERLLL QAHGDADCIA WSSLLQSCRI
HRNERIGRRA AEVLMDLEPE NFAVYIQVSK FYFEIGDFEI SRQIREIAAS RELMREIASG
KMVYTDLDIL EELEKFDVLL DDDETKLFDL PSFTSRHSGK NLVNVDTFGA AGDGVSDDTQ
AFISAWSKAC GTSKSVFLVP EGRRYLVNAT KFNGPCEQKL IIQVKFNILS PEFLLSSVGK
QKLDHSNIYK YVIDGTIVAP DEPSNWDSKF QRIWLEFSKL KGVVFQGKGV IDGSGSKWWA
ASCKKNKSNA LTIESSSGVK VSGLTIQNSQ QMNFIIARSD SVRVSKVMVS SPGDSPNTDG
IHITGSTNVI LQDCKIGTGD DCVSIVNASS NIKMKNIYCG PGHGISIGSL GKDNTTGIVT
QVVLDTALLR ETTNGLRIKT YQVKKLQSLR KTSIWLDREQ FYFIVYLSNR EVLMQDVANP
ILIDQFYCDS PTTCQNQTSA VKISQIMYRN ITGTTKSEKA IKFACSDTVP CSHIVLNNVN
LEGKDGQVEA YCNSAEGFGY GVIHPSADCL YSHDDKGLDQ TRKSEDAETG HDEL
//