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Database: UniProt
Entry: D7KNF9_ARALL
LinkDB: D7KNF9_ARALL
Original site: D7KNF9_ARALL 
ID   D7KNF9_ARALL            Unreviewed;      1134 AA.
AC   D7KNF9;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 62.
DE   SubName: Full=F28C11.9 {ECO:0000313|EMBL:EFH66843.1};
GN   ORFNames=ARALYDRAFT_313215 {ECO:0000313|EMBL:EFH66843.1};
OS   Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN   [1] {ECO:0000313|Proteomes:UP000008694}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX   PubMed=21478890; DOI=10.1038/ng.807;
RA   Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA   Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA   Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA   Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA   Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA   Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT   "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT   change.";
RL   Nat. Genet. 43:476-481(2011).
CC   -!- SIMILARITY: Belongs to the glycosyl hydrolase 28 family.
CC       {ECO:0000256|ARBA:ARBA00008834, ECO:0000256|RuleBase:RU361169}.
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DR   EMBL; GL348713; EFH66843.1; -; Genomic_DNA.
DR   RefSeq; XP_002890584.1; XM_002890538.1.
DR   AlphaFoldDB; D7KNF9; -.
DR   EnsemblPlants; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995.
DR   Gramene; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995; fgenesh1_pm.C_scaffold_1001995.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_008988_0_0_1; -.
DR   Proteomes; UP000008694; Unassembled WGS sequence.
DR   GO; GO:0004650; F:polygalacturonase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 2.160.20.10; Single-stranded right-handed beta-helix, Pectin lyase-like; 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR000743; Glyco_hydro_28.
DR   InterPro; IPR012334; Pectin_lyas_fold.
DR   InterPro; IPR011050; Pectin_lyase_fold/virulence.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 2.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF00295; Glyco_hydro_28; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 1.
DR   SUPFAM; SSF51126; Pectin lyase-like; 1.
DR   PROSITE; PS00502; POLYGALACTURONASE; 1.
DR   PROSITE; PS51375; PPR; 3.
PE   3: Inferred from homology;
KW   Glycosidase {ECO:0000256|ARBA:ARBA00023295, ECO:0000256|RuleBase:RU361169};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU361169};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          76..110
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          279..313
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          484..518
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   ACT_SITE        943
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU10052"
SQ   SEQUENCE   1134 AA;  125325 MW;  E4D45AC0146258BC CRC64;
     MRGPQALYFL RRTTTLAQHL CPLAPLIVTP RMEFSSFLEE NPSDVVYTHN RKIDELIKSG
     NLVSAHEVFD GMSVRDVVTY NLLISGNSRN GCSLRAIEIY AEMVSCGLRE SASTFPSVLS
     VCSDELFCRE GIQVHCRVIS LGFGCNMFVR SALVGLYASF WLFDVALKLF DEMPERNLAV
     CNLLLKCFCE TGESKRLFGV YCRMELEGVA KNGLTYCYLL RGCSNDQLLY VGKQLHSLVI
     KSGWDISNIF VANALVDYYS ACGDLSGSIK SFNVVPEKDV ISWNSIVSVC ADYGSVLDSL
     GLFSKMQFWG KRPSIRSFMS FLNVCSRNSD IQSGKQIHCY VLKMGFDVSS LLVQSSLIDM
     YGKCNEIESS VLAYQSLPCL TLECCNSLMT SLMHCGITKD IIEMFGLMVD EGTGIDEVTL
     STVLKALSLS LPESLHSCTL VHCCAIKSGY AADVAVSCSL IDTYSKSGQN EVSRKVFDEL
     DSPNIFCLTS IINGYARNGM GRDCVEMLRE MDQKNLIPDE VTILSVLSGC SHSGLVEEGE
     LIFDSLELKY GISPGRKLYA CLVDLLGRAG LVEKAERLLL QAHGDADCIA WSSLLQSCRI
     HRNERIGRRA AEVLMDLEPE NFAVYIQVSK FYFEIGDFEI SRQIREIAAS RELMREIASG
     KMVYTDLDIL EELEKFDVLL DDDETKLFDL PSFTSRHSGK NLVNVDTFGA AGDGVSDDTQ
     AFISAWSKAC GTSKSVFLVP EGRRYLVNAT KFNGPCEQKL IIQVKFNILS PEFLLSSVGK
     QKLDHSNIYK YVIDGTIVAP DEPSNWDSKF QRIWLEFSKL KGVVFQGKGV IDGSGSKWWA
     ASCKKNKSNA LTIESSSGVK VSGLTIQNSQ QMNFIIARSD SVRVSKVMVS SPGDSPNTDG
     IHITGSTNVI LQDCKIGTGD DCVSIVNASS NIKMKNIYCG PGHGISIGSL GKDNTTGIVT
     QVVLDTALLR ETTNGLRIKT YQVKKLQSLR KTSIWLDREQ FYFIVYLSNR EVLMQDVANP
     ILIDQFYCDS PTTCQNQTSA VKISQIMYRN ITGTTKSEKA IKFACSDTVP CSHIVLNNVN
     LEGKDGQVEA YCNSAEGFGY GVIHPSADCL YSHDDKGLDQ TRKSEDAETG HDEL
//
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