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Database: UniProt
Entry: D7L3Z4_ARALL
LinkDB: D7L3Z4_ARALL
Original site: D7L3Z4_ARALL 
ID   D7L3Z4_ARALL            Unreviewed;      1134 AA.
AC   D7L3Z4;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 67.
DE   RecName: Full=Exonuclease domain-containing protein {ECO:0000259|SMART:SM00479};
GN   ORFNames=ARALYDRAFT_318289 {ECO:0000313|EMBL:EFH61331.1};
OS   Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN   [1] {ECO:0000313|Proteomes:UP000008694}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX   PubMed=21478890; DOI=10.1038/ng.807;
RA   Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA   Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA   Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA   Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA   Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA   Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT   "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT   change.";
RL   Nat. Genet. 43:476-481(2011).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; GL348715; EFH61331.1; -; Genomic_DNA.
DR   RefSeq; XP_002885072.1; XM_002885026.1.
DR   AlphaFoldDB; D7L3Z4; -.
DR   STRING; 81972.D7L3Z4; -.
DR   EnsemblPlants; fgenesh1_pm.C_scaffold_3001305; fgenesh1_pm.C_scaffold_3001305; fgenesh1_pm.C_scaffold_3001305.
DR   Gramene; fgenesh1_pm.C_scaffold_3001305; fgenesh1_pm.C_scaffold_3001305; fgenesh1_pm.C_scaffold_3001305.
DR   eggNOG; KOG0542; Eukaryota.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_278666_0_0_1; -.
DR   Proteomes; UP000008694; Unassembled WGS sequence.
DR   GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   CDD; cd06133; ERI-1_3'hExo_like; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR047201; ERI-1_3'hExo-like.
DR   InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3.
DR   InterPro; IPR006527; F-box-assoc_dom_typ1.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 5.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF07734; FBA_1; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 2.
DR   Pfam; PF00929; RNase_T; 1.
DR   SMART; SM00479; EXOIII; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   DOMAIN          125..310
FT                   /note="Exonuclease"
FT                   /evidence="ECO:0000259|SMART:SM00479"
FT   REPEAT          434..468
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          535..569
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          640..674
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          741..775
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          776..811
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          43..63
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1134 AA;  127138 MW;  134DFDDCBD68B2A0 CRC64;
     MASAFSAFRV SLSRISPFRD TRFSYPATFA LAHTKRIMCS STHSVSSSPS PSDISSSSSS
     SPSTFSLMGA SENARWRPMC LYYTHGKCTK MDDPAHLEIF NHDCSKELPV AATDLGRKKS
     QEFNFFLVID LEGKVEILEF PVLIVDAKTM EVVDLFHRFV RPTKMSEQAI NKYIEGKYGE
     VGVDRVWHDT AIPFKQVVEE FEAWLAEHDL WTKDTDGALN DAAFITCGNW DIKTKIPEQC
     VVSNINLPPY FTEWINLKDI YLNFYGREAR GMVSMMRQCG IKLMGSHHLG IDDTKNITRV
     VQRMLSEGAV LKITARRSKS NTRNVEFLFK NRIKPMNWPN LGCNRLCAGS SESQTATLCL
     CSFCQHLLHS PTEEDSHVLE NCYVLEFIIF TNSNFRLSGS GLNLITSNYL IDMYCKCREQ
     LIAYKVFDSM PERNVVSWTA LMSGHVLNGD LNGSLSLFTE MGRQGIYPNE FTFSTNLKAC
     GLLNALEKGL QIHGFCLKIG FEMMVEVGNS LVDMYSKCGR INEAEKVFRW MVGRSLISWN
     AMIAGYVHAG YGSRALATFG MMQEAKIKER PDEFTLTSLL KACSSTGMIY AGKQIHGFLV
     RSGFHCPSSA TITGSLVDLY VKCGNLFSAR KAFDQIKEKT MISWSSLILG YAQEGDFVEA
     MGLFKRLQEL SSQIDSFVLS SIIGVFADFA LLQQGKQMQA LVVKLPSGLE TSVSNSLVDM
     YLKCGLVDEA EKCFAEMQLK DVISWTVMIT GYGKHGLGKK AVSIFNKMLR HNIEPDEVCY
     LAVLSACSHS GMIKEGEELF SKLLETQGIK PRVEHYACVV DLLGRAGRLK EAKHLVDTMP
     IKPNVGIWQT LLSLCRVHGD IELGKEVGKI LLRIDGKNPA NYVMMSNLYG QAGYWNEQGN
     ARELGSIKGL QKEAGMSWVE IEREVHFFRS GEDSHPLTLV IQETLKEVER RLREELGYVY
     GLKHELHDID DESKEENLRA HSEKLAIGLA LATGGLNQKG KTIRVFKNLR VCVDCHEFIK
     GLSKITKIAY VVRDAVRFHS FEDGCCSCGD YCFFIDEQEK VAVVFDVDGY RDTETARYHT
     AFIIGDDGYF KSVSLGEAPN VYDGKPGHLG YTPQFYCPPL VCSSSYLPSF VSHS
//
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