ID D7L872_ARALL Unreviewed; 415 AA.
AC D7L872;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 63.
DE RecName: Full=Histone-binding protein RBBP4 N-terminal domain-containing protein {ECO:0000259|Pfam:PF12265};
GN ORFNames=ARALYDRAFT_480561 {ECO:0000313|EMBL:EFH62335.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the WD repeat RBAP46/RBAP48/MSI1 family.
CC {ECO:0000256|ARBA:ARBA00009341}.
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DR EMBL; GL348715; EFH62335.1; -; Genomic_DNA.
DR RefSeq; XP_002886076.1; XM_002886030.1.
DR AlphaFoldDB; D7L872; -.
DR STRING; 81972.D7L872; -.
DR EnsemblPlants; fgenesh2_kg.3__3262__AT2G16780.1; fgenesh2_kg.3__3262__AT2G16780.1; fgenesh2_kg.3__3262__AT2G16780.1.
DR GeneID; 9320085; -.
DR Gramene; fgenesh2_kg.3__3262__AT2G16780.1; fgenesh2_kg.3__3262__AT2G16780.1; fgenesh2_kg.3__3262__AT2G16780.1.
DR KEGG; aly:9320085; -.
DR eggNOG; KOG0264; Eukaryota.
DR HOGENOM; CLU_020445_3_1_1; -.
DR OrthoDB; 5472072at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR022052; Histone-bd_RBBP4_N.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR22850:SF196; WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED; 1.
DR PANTHER; PTHR22850; WD40 REPEAT FAMILY; 1.
DR Pfam; PF12265; CAF1C_H4-bd; 1.
DR Pfam; PF00400; WD40; 5.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 5.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 16..87
FT /note="Histone-binding protein RBBP4 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF12265"
FT REPEAT 164..206
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 213..255
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 300..335
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 359..393
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 415 AA; 46652 MW; E8409966CB4CB7FC CRC64;
MADEGKEDTG MDQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PSPYAADPYF
GVHKLILGTH TSGSAQDFLM VADVVTPTPN GEPGLGGPNQ DPIIPKVEIR QKIRVDGEVN
RARCMPQKPT LVGAKTSGCE VFLFDYAKHA ATPQTSECDP DLRLVGHDKE GYGLSWSPFK
EGYLLSGSQD KKICLWDVSA TPQDKVLNAM FVYEGHESSI ADVSWHMKNE NLFGSAGEDG
RLVIWDTRTN QMQHQVKIHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG
GHKAKISDFA WNENEPWVIA SVAEDNSLQV WQMAESIYRD ENDAEDIKED ITQQS
//