ID D7L8B1_ARALL Unreviewed; 772 AA.
AC D7L8B1;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE SubName: Full=HCF152 {ECO:0000313|EMBL:EFH58891.1};
GN ORFNames=ARALYDRAFT_478286 {ECO:0000313|EMBL:EFH58891.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; GL348715; EFH58891.1; -; Genomic_DNA.
DR RefSeq; XP_002882632.1; XM_002882586.1.
DR AlphaFoldDB; D7L8B1; -.
DR STRING; 81972.D7L8B1; -.
DR EnsemblPlants; fgenesh2_kg.3__987__AT3G09650.1; fgenesh2_kg.3__987__AT3G09650.1; fgenesh2_kg.3__987__AT3G09650.1.
DR GeneID; 9318698; -.
DR Gramene; fgenesh2_kg.3__987__AT3G09650.1; fgenesh2_kg.3__987__AT3G09650.1; fgenesh2_kg.3__987__AT3G09650.1.
DR KEGG; aly:9318698; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_022641_0_0_1; -.
DR OrthoDB; 1206490at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0009570; C:chloroplast stroma; IEA:EnsemblPlants.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0006397; P:mRNA processing; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR46598; BNAC05G43320D PROTEIN; 1.
DR PANTHER; PTHR46598:SF5; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF13812; PPR_3; 2.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 228..262
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 263..297
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 407..437
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 445..479
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 480..515
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 516..550
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 551..581
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 587..621
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 676..710
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 344..371
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 347..370
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 772 AA; 86416 MW; FA1A5BCC92B65D05 CRC64;
MNILRPPTSS PSFPPYPNSV SLTPPVSFTL PNTSITNAGR PTRRPIFQRS ASGTANSSAG
DLSSFLGSPS EAYSTHNDQE LLFLLRNRKT DEAWAKYVQS THLPGPTCLS RLVSQLSYQS
KPESLTRAQS ILTRLRNERQ LHRLDANSLG LLAMAAAKSG QTLYAVSVIK SMIRSGYLPH
VKAWTAAVAS LSAAGDDGPE ESIKLFTAIT RRVKRFGDQS LVAQSRPDTA AFNAVLNACA
NLGDTEKYWK LFDEMSEWDC EPDVLTYNVM IKLCARVDRK ELIVYVLERI IDKGIKVCMT
TMHSLVAAYV GFGDLRTAER IVQAMREKRR DLCKVLRECN AEDLKEKEEE EAAEDDEDAF
EDDEDSGYSA RDEVSEEGFE DVFKKLLPNS VDPSGDPPLL PKVFAPDSRI YTTLMKGYMK
NGRVADTARM LEAMRRQDDR NSHPDEVTYT TVVSAFVKAG LMDRARQVLA EMARMGVPAN
RITYNVLLKG YCKQLQIDRA EDLLREMAED AGIEPDVVSY NIIIDGCILI DDSAGALAFF
NEMRTRGIAP TKISYTTLMK AFAMSGQPKL ANRVFDEMMN DPRVKVDLIA WNMLVEGYCR
LGLIEDAQRV VSRMKENGFY PNVATYGSLA NGVSLARKPG EALLLWKEIK ERCEVKKKEA
PSDSSSDPSP PMLKPDEGLL DTLADICVRA AFFKKALEII ACMEENGIPP NKTKYKKIYV
EMHSRMFTSK HASQARIDRR VERKRAAEAF KFWLGLPNSY YGSEWKLGPR ED
//
