ID D7LAF8_ARALL Unreviewed; 827 AA.
AC D7LAF8;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE SubName: Full=PHD finger family protein {ECO:0000313|EMBL:EFH60372.1};
GN ORFNames=ARALYDRAFT_900177 {ECO:0000313|EMBL:EFH60372.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
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DR EMBL; GL348715; EFH60372.1; -; Genomic_DNA.
DR RefSeq; XP_002884113.1; XM_002884067.1.
DR AlphaFoldDB; D7LAF8; -.
DR STRING; 81972.D7LAF8; -.
DR EnsemblPlants; scaffold_304147.1; scaffold_304147.1; scaffold_304147.1.
DR GeneID; 9320179; -.
DR Gramene; scaffold_304147.1; scaffold_304147.1; scaffold_304147.1.
DR KEGG; aly:9320179; -.
DR eggNOG; KOG1081; Eukaryota.
DR eggNOG; KOG1862; Eukaryota.
DR eggNOG; KOG1946; Eukaryota.
DR HOGENOM; CLU_343675_0_0_1; -.
DR OrthoDB; 50760at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00072; GYF; 1.
DR CDD; cd15568; PHD5_NSD; 1.
DR CDD; cd10567; SWIB-MDM2_like; 1.
DR Gene3D; 3.30.1490.40; -; 1.
DR Gene3D; 1.10.245.10; SWIB/MDM2 domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003169; GYF.
DR InterPro; IPR035445; GYF-like_dom_sf.
DR InterPro; IPR036885; SWIB_MDM2_dom_sf.
DR InterPro; IPR003121; SWIB_MDM2_domain.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46695:SF17; PHD FINGER FAMILY PROTEIN _ SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN _ GYF DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46695; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED; 1.
DR Pfam; PF02213; GYF; 1.
DR Pfam; PF02201; SWIB; 1.
DR SMART; SM00444; GYF; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF55277; GYF domain; 1.
DR SUPFAM; SSF47592; SWIB/MDM2 domain; 1.
DR PROSITE; PS50829; GYF; 1.
DR PROSITE; PS51925; SWIB_MDM2; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 80..146
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 290..373
FT /note="DM2"
FT /evidence="ECO:0000259|PROSITE:PS51925"
FT DOMAIN 457..511
FT /note="GYF"
FT /evidence="ECO:0000259|PROSITE:PS50829"
FT REGION 18..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 52..71
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 228..253
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 403..437
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 789..827
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 238..253
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 403..436
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 804..827
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 827 AA; 91889 MW; 516CC63545A66B7D CRC64;
MPEIDLMRVD QCVSDVKLDS SSSPIEPPGF FDGGGSVDVD LKLDEQDSDC LKKRGRRGRP
PRTLCKASSP PISRKRREDE DVCFVCFDGG SLVLCDRRGC PKAYHPACVK RTEAFFRSRS
KWNCGWHICT TCQKDSFYMC YTCPYSVCKR CVRSSEYVVV RENKGFCGIC MKTIMLIENA
AEANKEKVQV DFDDQGSWEY LFKIYWVSLK EKLGLSLDDL TKARNPWKSS SSTVSKRRTT
SRVHEMDDGN SPGVMKVRRA KVRKMEAVSV SNLGPSMDSN SSLGDRLPPL TSAATWATDE
LLDFVGYMKN GDISVLSKYD VQTLVLEYVR RNNLQNSPQN SEIMCDTKLM RLFGKERVDN
LEMLKLLDSH FIDQVRSPVT DNSAGGVTET MSFQINASKS CNRLNTSEQH QEGESQQLNG
HSIQVRPSSS DSRNHAVVKP DTCATLSNKP IDGLDTNMVW LYGDPDGKIH GPFSLYNLRQ
WNSSGHFPPE LRIWRLGEQQ NSSILLTDAL NGQFHKTGLL QNRSIPKQDV TATIANDQNR
PVAVPKIESR ILDFSPNSVC TDQSVISSSN SVITRSSDVS NKSGNNFNRT VPLDFSLSNE
RDTVGSVSLW NKRKVESPLL VQSPISCSLS LATLPRNSNC SLPPHERWKA GQTDPDGNNA
AMNAYNQNGS LNGTAEKQVT ATVQSCGQNW NAATPSSASN MWDSNSGLTS FPDNQEIDFL
DLFSPTFKFN FASTTTDWQP IVAGPDECDE SVSDLLAEVE AMESQKRLPS PTSTFRGPEE
LLIRHSINDS FSPAEGHSPA LDVSKGDSMS STNDLQMHSR SNNTVHF
//
