ID D7LBU4_ARALL Unreviewed; 873 AA.
AC D7LBU4;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 62.
DE RecName: Full=SNF2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=ARALYDRAFT_483627 {ECO:0000313|EMBL:EFH58252.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family.
CC {ECO:0000256|ARBA:ARBA00007025}.
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DR EMBL; GL348716; EFH58252.1; -; Genomic_DNA.
DR RefSeq; XP_002881993.1; XM_002881947.1.
DR AlphaFoldDB; D7LBU4; -.
DR STRING; 81972.D7LBU4; -.
DR EnsemblPlants; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2.
DR Gramene; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2.
DR eggNOG; KOG0385; Eukaryota.
DR HOGENOM; CLU_000315_17_9_1; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003678; F:DNA helicase activity; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR CDD; cd03331; Macro_Poa1p-like_SNF2; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.220.10; Leucine Aminopeptidase, subunit E, domain 1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR InterPro; IPR031053; ALC1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR043472; Macro_dom-like.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR PANTHER; PTHR47157; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE; 1.
DR PANTHER; PTHR47157:SF1; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52949; Macro domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT DOMAIN 60..235
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 377..547
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 873 AA; 98723 MW; 8D496C881CE00C68 CRC64;
MSKESSPPKV PSTMEYERRL EAAAKFILEK EAKSPPDCRE FGVTATLKPH QVEGVSWLIQ
KYLLGVNVVL ELDQMGLGKT LQAISFLSYL KFHQGLPGPF LVLCPLSVTD GWVSEINRFT
PNLEVLRYVG DKYCRRDMRK SMYDHVKKSS KGHLLPFDVL LTTYDIALVD QDFLSQIPWH
YAIIDEAQRL KNPNSVLYNV LLDQFLIPRR LLITGTPIQN NLTELWALMH FCMPLVFGAL
DQFLVAFKET GEGLSGLDVS NDKETYKSLK FILGAFMLRR TKSLLIESGN LVLPPLTELT
VMVPLVSLQK KIYTSILRKE LPGLLALSSG GSNHTSLQNI VIQLRKACSH PYLFPGIEPE
PFEEGEHLVQ ASGKLFVLDQ LLKRLHDIGH RVLLFSQMTS TLDILQDFME LRRYSYERLD
GSVRAEERFA AIKNFSAKSE RGLDSEVDAS NAFVFMISTR AGGVGLNLVA ADTVIFYEQD
WNPQVDKQAL QRAHRIGQIS HVLSINLVTE HSVEEVILRR AERKLQLSHN VVGDNMEEKD
EDRGDLRSLV FGLQRFDPEE IHSEESDNLK MVEISSLAEK VVAIRQNVEP DKEARKFKID
SSDTLRGNLS SACLDSELDE ASYLSWVEKL KKASRSSKDE KIIELGNRKN LSEERNLRIE
AARKKAEEKK LASWEAHGYR SLSVEEPIFP DDVDSSSDAG SVNFVFGDCT NPSTVSHEPA
IIFSCVDDSG NWGRGGMFDA LSKLSNTVPD AYHRASEFKD LHLGDLHLIK IDDSYDQQNT
EESKPLWVAV AVTQSYNPRR KVPRSSISIP DLESCLAKAS FSASQKSASL HMPRIGYQDG
SDRSQWYTVE RLLHKYSSIF AVKIFVYYYR RSP
//