GenomeNet

Database: UniProt
Entry: D7LBU4_ARALL
LinkDB: D7LBU4_ARALL
Original site: D7LBU4_ARALL 
ID   D7LBU4_ARALL            Unreviewed;       873 AA.
AC   D7LBU4;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 62.
DE   RecName: Full=SNF2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=ARALYDRAFT_483627 {ECO:0000313|EMBL:EFH58252.1};
OS   Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN   [1] {ECO:0000313|Proteomes:UP000008694}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX   PubMed=21478890; DOI=10.1038/ng.807;
RA   Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA   Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA   Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA   Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA   Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA   Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT   "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT   change.";
RL   Nat. Genet. 43:476-481(2011).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family.
CC       {ECO:0000256|ARBA:ARBA00007025}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; GL348716; EFH58252.1; -; Genomic_DNA.
DR   RefSeq; XP_002881993.1; XM_002881947.1.
DR   AlphaFoldDB; D7LBU4; -.
DR   STRING; 81972.D7LBU4; -.
DR   EnsemblPlants; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2.
DR   Gramene; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2; fgenesh2_kg.4__2687__AT2G44980.2.
DR   eggNOG; KOG0385; Eukaryota.
DR   HOGENOM; CLU_000315_17_9_1; -.
DR   Proteomes; UP000008694; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR   GO; GO:0003678; F:DNA helicase activity; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd03331; Macro_Poa1p-like_SNF2; 1.
DR   CDD; cd18793; SF2_C_SNF; 1.
DR   Gene3D; 3.40.220.10; Leucine Aminopeptidase, subunit E, domain 1; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR   InterPro; IPR031053; ALC1.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR043472; Macro_dom-like.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR038718; SNF2-like_sf.
DR   InterPro; IPR000330; SNF2_N.
DR   PANTHER; PTHR47157; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE; 1.
DR   PANTHER; PTHR47157:SF1; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF00176; SNF2-rel_dom; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52949; Macro domain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000008694}.
FT   DOMAIN          60..235
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   DOMAIN          377..547
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
SQ   SEQUENCE   873 AA;  98723 MW;  8D496C881CE00C68 CRC64;
     MSKESSPPKV PSTMEYERRL EAAAKFILEK EAKSPPDCRE FGVTATLKPH QVEGVSWLIQ
     KYLLGVNVVL ELDQMGLGKT LQAISFLSYL KFHQGLPGPF LVLCPLSVTD GWVSEINRFT
     PNLEVLRYVG DKYCRRDMRK SMYDHVKKSS KGHLLPFDVL LTTYDIALVD QDFLSQIPWH
     YAIIDEAQRL KNPNSVLYNV LLDQFLIPRR LLITGTPIQN NLTELWALMH FCMPLVFGAL
     DQFLVAFKET GEGLSGLDVS NDKETYKSLK FILGAFMLRR TKSLLIESGN LVLPPLTELT
     VMVPLVSLQK KIYTSILRKE LPGLLALSSG GSNHTSLQNI VIQLRKACSH PYLFPGIEPE
     PFEEGEHLVQ ASGKLFVLDQ LLKRLHDIGH RVLLFSQMTS TLDILQDFME LRRYSYERLD
     GSVRAEERFA AIKNFSAKSE RGLDSEVDAS NAFVFMISTR AGGVGLNLVA ADTVIFYEQD
     WNPQVDKQAL QRAHRIGQIS HVLSINLVTE HSVEEVILRR AERKLQLSHN VVGDNMEEKD
     EDRGDLRSLV FGLQRFDPEE IHSEESDNLK MVEISSLAEK VVAIRQNVEP DKEARKFKID
     SSDTLRGNLS SACLDSELDE ASYLSWVEKL KKASRSSKDE KIIELGNRKN LSEERNLRIE
     AARKKAEEKK LASWEAHGYR SLSVEEPIFP DDVDSSSDAG SVNFVFGDCT NPSTVSHEPA
     IIFSCVDDSG NWGRGGMFDA LSKLSNTVPD AYHRASEFKD LHLGDLHLIK IDDSYDQQNT
     EESKPLWVAV AVTQSYNPRR KVPRSSISIP DLESCLAKAS FSASQKSASL HMPRIGYQDG
     SDRSQWYTVE RLLHKYSSIF AVKIFVYYYR RSP
//
DBGET integrated database retrieval system