ID D7M887_ARALL Unreviewed; 280 AA.
AC D7M887;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 27-MAR-2024, entry version 57.
DE RecName: Full=t-SNARE coiled-coil homology domain-containing protein {ECO:0000259|PROSITE:PS50192};
GN ORFNames=ARALYDRAFT_488543 {ECO:0000313|EMBL:EFH50055.1};
OS Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=81972 {ECO:0000313|Proteomes:UP000008694};
RN [1] {ECO:0000313|Proteomes:UP000008694}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. MN47 {ECO:0000313|Proteomes:UP000008694};
RX PubMed=21478890; DOI=10.1038/ng.807;
RA Hu T.T., Pattyn P., Bakker E.G., Cao J., Cheng J.-F., Clark R.M.,
RA Fahlgren N., Fawcett J.A., Grimwood J., Gundlach H., Haberer G.,
RA Hollister J.D., Ossowski S., Ottilar R.P., Salamov A.A., Schneeberger K.,
RA Spannagl M., Wang X., Yang L., Nasrallah M.E., Bergelson J.,
RA Carrington J.C., Gaut B.S., Schmutz J., Mayer K.F.X., Van de Peer Y.,
RA Grigoriev I.V., Nordborg M., Weigel D., Guo Y.-L.;
RT "The Arabidopsis lyrata genome sequence and the basis of rapid genome size
RT change.";
RL Nat. Genet. 43:476-481(2011).
CC -!- SIMILARITY: Belongs to the syntaxin family.
CC {ECO:0000256|ARBA:ARBA00009063}.
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DR EMBL; GL348718; EFH50055.1; -; Genomic_DNA.
DR RefSeq; XP_002873796.1; XM_002873750.1.
DR AlphaFoldDB; D7M887; -.
DR STRING; 81972.D7M887; -.
DR EnsemblPlants; fgenesh2_kg.6__1677__AT5G16830.1; fgenesh2_kg.6__1677__AT5G16830.1; fgenesh2_kg.6__1677__AT5G16830.1.
DR GeneID; 9307807; -.
DR Gramene; fgenesh2_kg.6__1677__AT5G16830.1; fgenesh2_kg.6__1677__AT5G16830.1; fgenesh2_kg.6__1677__AT5G16830.1.
DR KEGG; aly:9307807; -.
DR eggNOG; KOG0811; Eukaryota.
DR HOGENOM; CLU_059257_3_0_1; -.
DR OrthoDB; 688606at2759; -.
DR Proteomes; UP000008694; Unassembled WGS sequence.
DR GO; GO:0005770; C:late endosome; IEA:EnsemblPlants.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0030140; C:trans-Golgi network transport vesicle; IEA:EnsemblPlants.
DR GO; GO:0005484; F:SNAP receptor activity; IEA:EnsemblPlants.
DR GO; GO:0045324; P:late endosome to vacuole transport; IEA:EnsemblPlants.
DR GO; GO:0006623; P:protein targeting to vacuole; IEA:EnsemblPlants.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR CDD; cd15840; SNARE_Qa; 1.
DR CDD; cd00179; SynN; 1.
DR Gene3D; 1.20.5.110; -; 1.
DR Gene3D; 1.20.58.70; -; 1.
DR InterPro; IPR010989; SNARE.
DR InterPro; IPR045242; Syntaxin.
DR InterPro; IPR006011; Syntaxin_N.
DR InterPro; IPR000727; T_SNARE_dom.
DR PANTHER; PTHR19957; SYNTAXIN; 1.
DR PANTHER; PTHR19957:SF431; SYNTAXIN-21; 1.
DR Pfam; PF05739; SNARE; 1.
DR Pfam; PF14523; Syntaxin_2; 1.
DR SMART; SM00503; SynN; 1.
DR SMART; SM00397; t_SNARE; 1.
DR SUPFAM; SSF47661; t-snare proteins; 1.
DR PROSITE; PS50192; T_SNARE; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000008694};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT TRANSMEM 257..279
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 187..249
FT /note="T-SNARE coiled-coil homology"
FT /evidence="ECO:0000259|PROSITE:PS50192"
FT REGION 1..33
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..31
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 280 AA; 31307 MW; 1C9A0B485EE605D2 CRC64;
MSFQDLEAGT RFQTPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP
KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGET SQIKKIADAK LAKDFQSVLK
EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTDESLR TSQQQTLLLQ SRRQEVVFLD
NEITFNEAII EEREQGIREI QEQIGEVNDM FKDLAGLVNH QGVIVDDINS HIDNSHAATT
QATAQLRKAA KTQRSNSSLT CLLILIFGIV LLIVIIVVLV
//
