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Database: UniProt
Entry: D7U7F9_VITVI
LinkDB: D7U7F9_VITVI
Original site: D7U7F9_VITVI 
ID   D7U7F9_VITVI            Unreviewed;       900 AA.
AC   D7U7F9;
DT   10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT   10-AUG-2010, sequence version 1.
DT   24-JAN-2024, entry version 73.
DE   RecName: Full=Pentatricopeptide repeat-containing protein, chloroplastic {ECO:0008006|Google:ProtNLM};
GN   OrderedLocusNames=VIT_16s0013g02120 {ECO:0000313|EMBL:CBI38673.3};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|EMBL:CBI38673.3, ECO:0000313|Proteomes:UP000009183};
RN   [1] {ECO:0000313|Proteomes:UP000009183}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX   PubMed=17721507; DOI=10.1038/nature06148;
RG   The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA   Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA   Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA   Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA   Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA   Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA   Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA   Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA   Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA   Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA   Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA   Wincker P.;
RT   "The grapevine genome sequence suggests ancestral hexaploidization in major
RT   angiosperm phyla.";
RL   Nature 449:463-467(2007).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
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DR   EMBL; FN596738; CBI38673.3; -; Genomic_DNA.
DR   RefSeq; XP_003634022.1; XM_003633974.3.
DR   AlphaFoldDB; D7U7F9; -.
DR   STRING; 29760.D7U7F9; -.
DR   PaxDb; 29760-VIT_16s0013g02120-t01; -.
DR   EnsemblPlants; Vitvi16g00523_t001; Vitvi16g00523_P001; Vitvi16g00523.
DR   GeneID; 100267412; -.
DR   Gramene; Vitvi16g00523_t001; Vitvi16g00523_P001; Vitvi16g00523.
DR   KEGG; vvi:100267412; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_011764_0_0_1; -.
DR   InParanoid; D7U7F9; -.
DR   OMA; LGFFEWM; -.
DR   OrthoDB; 445621at2759; -.
DR   Proteomes; UP000009183; Chromosome 16.
DR   GO; GO:0005675; C:transcription factor TFIIH holo complex; IBA:GO_Central.
DR   GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 7.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 10.
DR   PANTHER; PTHR47447:SF15; OS02G0120000 PROTEIN; 1.
DR   PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR   Pfam; PF01535; PPR; 8.
DR   Pfam; PF13041; PPR_2; 5.
DR   PROSITE; PS51375; PPR; 9.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          207..241
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          311..345
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          346..380
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          381..415
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          659..693
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          728..762
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          763..797
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          798..832
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          833..867
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   900 AA;  103455 MW;  D6D1A9270875368F CRC64;
     MASLKFSVSV DTYDSNKFHF SVNPSLPIIN SFARVKPINI SRLEAESWDT SDSNSVVDNI
     KTWNKDSGSE NLILESSNFR NDIWRRVQGV KRVRRRDPNS KFRSIRNDNG HEEQKSVNHF
     DDEIDVNEYG IGPELSVERC NAILKGLERC SDSKTMKFFE WMRENGKLEG NVSAYNLALR
     VLGRRGDWDA AETMIWEMNG DSDCQVNFQV YNTLIYACYK QGHVELGTKW FRLMLENGVR
     PNVATFGMVM SLYQKGWNVA DSEYAFSQMR SFGITCQSAY SAMITIYTRM SLYDKAEEVI
     DFIQEDKVIL NLENWLVLLN AYSQQGKLQE AERVLFSMQN AGFSPNIVAY NMLITGYGKA
     SNMDAAQHIF RNLKNVGLEP DESTYRSMIE GWGRAENYKE AEWYYNELKR LGFKPNSSNL
     YTMINLQAKY ADGEDAARTL DDMKRIGCQY SSVLGTLLQA YERAGRIDRV PLILKGSFYE
     YVLVNQTSCS ILVMAYVKHC LVDDAIKVLQ EKQWKDTIFE DNLYHLVICS CKELGRLENA
     VKIYSQMPNK KPNLHIMCTM IDIYSTLGRF SDAENLYLKL KSSEISLDMI AFSIVVRMYV
     KSGSLKDACS VLETMDEQKN IVPDIYLFCD MLRIYQQCGM LDKLQDLYYR ILKTGVTWDS
     EMYNCVINCC ARALPVDELS RLFDEMLLHG FAPNTITLNV MLDVYGKSRL FKKARKVLWL
     ARKRGLVDVI SYNTIIAAYG QSKDLKKMLS TVRQMQFNGF SVSLEVYNCM LDSYGKEGQI
     ESFRSVLRRM KESSCASDHY TYNIMINIYG EQGWIEEVAN VLTELKESGL GPDLCSYNTL
     IKAYGIAGMV EDAVVLVKEM RENGIQPDRI TYINLINALR KNDEFLEAVK WSLWMKQMGL
//
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