ID D7U7F9_VITVI Unreviewed; 900 AA.
AC D7U7F9;
DT 10-AUG-2010, integrated into UniProtKB/TrEMBL.
DT 10-AUG-2010, sequence version 1.
DT 24-JAN-2024, entry version 73.
DE RecName: Full=Pentatricopeptide repeat-containing protein, chloroplastic {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_16s0013g02120 {ECO:0000313|EMBL:CBI38673.3};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CBI38673.3, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; FN596738; CBI38673.3; -; Genomic_DNA.
DR RefSeq; XP_003634022.1; XM_003633974.3.
DR AlphaFoldDB; D7U7F9; -.
DR STRING; 29760.D7U7F9; -.
DR PaxDb; 29760-VIT_16s0013g02120-t01; -.
DR EnsemblPlants; Vitvi16g00523_t001; Vitvi16g00523_P001; Vitvi16g00523.
DR GeneID; 100267412; -.
DR Gramene; Vitvi16g00523_t001; Vitvi16g00523_P001; Vitvi16g00523.
DR KEGG; vvi:100267412; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_011764_0_0_1; -.
DR InParanoid; D7U7F9; -.
DR OMA; LGFFEWM; -.
DR OrthoDB; 445621at2759; -.
DR Proteomes; UP000009183; Chromosome 16.
DR GO; GO:0005675; C:transcription factor TFIIH holo complex; IBA:GO_Central.
DR GO; GO:0006281; P:DNA repair; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 7.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 10.
DR PANTHER; PTHR47447:SF15; OS02G0120000 PROTEIN; 1.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR Pfam; PF01535; PPR; 8.
DR Pfam; PF13041; PPR_2; 5.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 207..241
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 311..345
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 346..380
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 381..415
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 659..693
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 728..762
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 763..797
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 798..832
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 833..867
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 900 AA; 103455 MW; D6D1A9270875368F CRC64;
MASLKFSVSV DTYDSNKFHF SVNPSLPIIN SFARVKPINI SRLEAESWDT SDSNSVVDNI
KTWNKDSGSE NLILESSNFR NDIWRRVQGV KRVRRRDPNS KFRSIRNDNG HEEQKSVNHF
DDEIDVNEYG IGPELSVERC NAILKGLERC SDSKTMKFFE WMRENGKLEG NVSAYNLALR
VLGRRGDWDA AETMIWEMNG DSDCQVNFQV YNTLIYACYK QGHVELGTKW FRLMLENGVR
PNVATFGMVM SLYQKGWNVA DSEYAFSQMR SFGITCQSAY SAMITIYTRM SLYDKAEEVI
DFIQEDKVIL NLENWLVLLN AYSQQGKLQE AERVLFSMQN AGFSPNIVAY NMLITGYGKA
SNMDAAQHIF RNLKNVGLEP DESTYRSMIE GWGRAENYKE AEWYYNELKR LGFKPNSSNL
YTMINLQAKY ADGEDAARTL DDMKRIGCQY SSVLGTLLQA YERAGRIDRV PLILKGSFYE
YVLVNQTSCS ILVMAYVKHC LVDDAIKVLQ EKQWKDTIFE DNLYHLVICS CKELGRLENA
VKIYSQMPNK KPNLHIMCTM IDIYSTLGRF SDAENLYLKL KSSEISLDMI AFSIVVRMYV
KSGSLKDACS VLETMDEQKN IVPDIYLFCD MLRIYQQCGM LDKLQDLYYR ILKTGVTWDS
EMYNCVINCC ARALPVDELS RLFDEMLLHG FAPNTITLNV MLDVYGKSRL FKKARKVLWL
ARKRGLVDVI SYNTIIAAYG QSKDLKKMLS TVRQMQFNGF SVSLEVYNCM LDSYGKEGQI
ESFRSVLRRM KESSCASDHY TYNIMINIYG EQGWIEEVAN VLTELKESGL GPDLCSYNTL
IKAYGIAGMV EDAVVLVKEM RENGIQPDRI TYINLINALR KNDEFLEAVK WSLWMKQMGL
//