ID D8FFB0_9DELT Unreviewed; 347 AA.
AC D8FFB0;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE SubName: Full=Radical SAM domain protein {ECO:0000313|EMBL:EFK05565.1};
GN ORFNames=NPH_0179 {ECO:0000313|EMBL:EFK05565.1};
OS delta proteobacterium NaphS2.
OC Bacteria; Deltaproteobacteria.
OX NCBI_TaxID=88274 {ECO:0000313|EMBL:EFK05565.1, ECO:0000313|Proteomes:UP000003834};
RN [1] {ECO:0000313|EMBL:EFK05565.1, ECO:0000313|Proteomes:UP000003834}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NaphS2 {ECO:0000313|EMBL:EFK05565.1,
RC ECO:0000313|Proteomes:UP000003834};
RX PubMed=21124915; DOI=10.1371/journal.pone.0014072;
RA Didonato R.J., Young N.D., Butler J.E., Chin K.J., Hixson K.K., Mouser P.,
RA Lipton M.S., Deboy R., Methe B.A.;
RT "Genome Sequence of the Deltaproteobacterial Strain NaphS2 and Analysis of
RT Differential Gene Expression during Anaerobic Growth on Naphthalene.";
RL PLoS ONE 5:E14072-E14072(2010).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EFK05565.1}.
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DR EMBL; ADZZ01000764; EFK05565.1; -; Genomic_DNA.
DR AlphaFoldDB; D8FFB0; -.
DR OrthoDB; 9772409at2; -.
DR Proteomes; UP000003834; Unassembled WGS sequence.
DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd01335; Radical_SAM; 1.
DR CDD; cd21109; SPASM; 1.
DR Gene3D; 3.20.20.70; Aldolase class I; 1.
DR InterPro; IPR023885; 4Fe4S-binding_SPASM_dom.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR034391; Cmo-like_SPASM_containing.
DR InterPro; IPR006638; Elp3/MiaA/NifB-like_rSAM.
DR InterPro; IPR007197; rSAM.
DR PANTHER; PTHR11228:SF7; PQQA PEPTIDE CYCLASE; 1.
DR PANTHER; PTHR11228; RADICAL SAM DOMAIN PROTEIN; 1.
DR Pfam; PF04055; Radical_SAM; 1.
DR Pfam; PF13186; SPASM; 1.
DR SFLD; SFLDG01387; BtrN-like_SPASM_domain_contain; 1.
DR SFLD; SFLDS00029; Radical_SAM; 1.
DR SMART; SM00729; Elp3; 1.
DR SUPFAM; SSF102114; Radical SAM enzymes; 1.
PE 4: Predicted;
KW Iron {ECO:0000256|ARBA:ARBA00023004};
KW Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000003834};
KW S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691}.
FT DOMAIN 9..218
FT /note="Elp3/MiaA/NifB-like radical SAM core"
FT /evidence="ECO:0000259|SMART:SM00729"
SQ SEQUENCE 347 AA; 39700 MW; A6C07494AF9E7B2D CRC64;
MASVPERFLD IFMDQNNKCN LRCRMCGFSD PRVKNIRHYD MPFWLYEKIA QETFPFAKYV
ALSCLTEPLM THDLLDRIDL AKKYQVPFTE MISNGTMLKE KIIAGLLNSS LTRLGVSLDG
ARASTYEAIR TGAHFEDVVG NIRRFVEMRA AKGAEFPKLR LLHVISERNV DEFSEFLDLA
ESLKVDAIDV RTITGIGKAE LQPSTEESFW EKIRAYRSML AEWTEKSAIE DTSALRYQSE
EIRLLDSSGE KLTCRRPWNT LAIHANGNVH PCMSWSRGAM GNLADENFDQ IWKGQRFEDI
REEFAVEKPG VDCQHCVIKK APSVDEDTDF FFKMLNSTPP QNRSGKA
//
