ID D8R1C3_SELML Unreviewed; 1906 AA.
AC D8R1C3;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 24-JAN-2024, entry version 63.
DE RecName: Full=RING-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SELMODRAFT_438965 {ECO:0000313|EMBL:EFJ33527.1};
OS Selaginella moellendorffii (Spikemoss).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN [1] {ECO:0000313|EMBL:EFJ33527.1, ECO:0000313|Proteomes:UP000001514}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21551031; DOI=10.1126/science.1203810;
RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT "The Selaginella genome identifies genetic changes associated with the
RT evolution of vascular plants.";
RL Science 332:960-963(2011).
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DR EMBL; GL377570; EFJ33527.1; -; Genomic_DNA.
DR RefSeq; XP_002964689.1; XM_002964643.1.
DR STRING; 88036.D8R1C3; -.
DR EnsemblPlants; EFJ33527; EFJ33527; SELMODRAFT_438965.
DR Gramene; EFJ33527; EFJ33527; SELMODRAFT_438965.
DR KEGG; smo:SELMODRAFT_438965; -.
DR eggNOG; KOG4430; Eukaryota.
DR HOGENOM; CLU_236891_0_0_1; -.
DR InParanoid; D8R1C3; -.
DR Proteomes; UP000001514; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR031736; REXO1-like_dom.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR15315; RING FINGER PROTEIN 41, 151; 1.
DR PANTHER; PTHR15315:SF26; RING-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF15870; EloA-BP1; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00184; RING; 2.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 8..47
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 40..155
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 202..224
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 241..324
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 483..503
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 700..922
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 938..982
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1649..1724
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1765..1791
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..223
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 269..299
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 799..821
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 822..922
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 938..960
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1649..1686
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1687..1707
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1906 AA; 211359 MW; 4902BA221081F5EA CRC64;
MESERRLCGI CDAIVVERGL LDCCDHMFCF SCIEDWATVT NLCPMCKAQF KFLTFLATLM
LRNVKNDEAI QGRNENSFVE TRVAEEAFSY FIDEEAIACL DGDDCKLRMQ ALQTAFVDTS
VACDKCDRWY HACCVGFDPG KPNERTWLCP RCALPNEAVA DEQKETVTEK SAKHEEVAAS
MSFAFMETGE SAIVISMVGG KEGNAQAEPS SLPPSSSLPE PQEHTSLDKL LEDLGKQNAS
VHNDEEGQEL EEFEEEQEFK HDEKDVEEEF GNFGEEQQLE DFGFEDAEEE QELDFVEEQQ
QGQEVEPQVS IDREDVGQEL AGPATDFVPS ETLQNVTSEA DVEMKIEELV SDDDSDVKLR
HQVVKGRAVA EDSSEKQNQT DGKGVRTRII MRRDVDDQSL AEKIRRQVVE AAGGDGAQVS
NENLLAAYKA AIVKRDGPKQ KKAVDTARKN LKRKLYGGIR GRQVYDRDWD VAFWRDKVLG
DKRRKPEQEE AENTESTPQQ PDSILDRLCF ADCSLLPKKE GFRPPPVTED KPRPKPTLHQ
ASKTLEVKTE VPADGNAEKD KKQWALELLA RKNKQQVRST HDTLKGNFVH LPKLPIDMRP
SIEPNPRSKI PSAVRQIQLN RLTDHYLKKV KIGRNQASED AVNAALSKEA EIFLRSNSKG
VYVNLCARAL AQGDAPPAKA NVETNKDVVA EALVAAGLVS DSPPGSPLPQ EEAAAQPAAQ
PAADVIEAPE AQEPSRGTEV LTNPGSGKQG ITALLEHLRK EEEPELPGLE PVCTPSESKQ
EQADVKSESL HVPEGGSNAA DESDSNATDA TVSAKQEDTT ALTNEETVKE KEEEKQKPCK
VADSEKDIEK TVDHKEGVKN QENAKVEAIK PEQDPTATKA HVDRRTDRSS RKHPRDPARP
DRHAARKKEK VGPEDPMSDE KFSELDSRID RVRNSIAQQF GENSDIAQQI RESSGSQAPK
PRKPTPDHPR KHQRSSPSVQ EQVEMYVKEH IRPLYKSGVI MAEQYQWTVS KTTAKVMQHH
KDAPSAEFLI SEGGRVKKLA EQYLQSMAAS LIACVPVTIP RQCSGFGSSS SSLAASPRNC
SVRCRASSEN GSHFAQFLNL DAFDNALQVF RDESKGIVCY RTPTGEITCE GIDEGPHFEP
AADNQKGLFL SQLLFVKGAE EPLVNIMGRY QSPLVKHDLS RLEDPESRHI ALTSLKNCVK
QLEAECLPFF LDQISEAHHD ISRPYVISLY EDIARTHQTL LVPYIPRIME ALITALSESG
SSLHVHRACA KVVAALAKFC IDLERLTHQA KEVLRLLCEP LLCVLVGKFE PVSAGAAVSL
QALVEFENWI HAPKELVNEV CFRVTAAMSG KSAPTVAHLH LACAVAKVNR EVFESYGLEL
MNAAKYILQT AGSWTLRVAA AELLNLVLSM VDGIVLSTEI ASVIDVLERY RLDRMPKVRS
AVAEALRTAK SCYYNGGRAT TKMIFSVGVE TKRRQELHDA GIRSILLPSF HNEFGKRDAG
LRRAVAPKFD RGGGGGEEVG GYDFVIVEDY GEPCQQYGRR SGKGAGRRFG NRAGKVKSEP
RVRHTVSAEP GGYVIQEWIK VDDHERFPHP HCGVLAGIDE GEEYEEEPTY VRESMYNKQF
YSPSSERHVV IFDEDQVVTD TCKRLIENSE APSTFTGLSA PEPVPSTSEP GSIEHPSSSN
LIQDSEQEEW SVRDNPIAAK SDEGRSPYER SITPPARLDA ARSPEAQEVI ISNAVVEEIF
EPTPLRCDEE QILQQEVAAL AGIGDTRNKE NRDSAELNDC SLNSPEQTEL KSENVTEEMV
DTFRRSWEVL ETNDKHEVSM GVVEDDKVVT KVYSSRKQQL VNALTASFTG GLWQEHHQRE
GWHRKLQSGV ERVLGGSVCA ALAIPAAMAL IKCLEPNFGG REMVPT
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