GenomeNet

Database: UniProt
Entry: D8RJ16_SELML
LinkDB: D8RJ16_SELML
Original site: D8RJ16_SELML 
ID   D8RJ16_SELML            Unreviewed;       846 AA.
AC   D8RJ16;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   08-NOV-2023, entry version 53.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=SELMODRAFT_94889 {ECO:0000313|EMBL:EFJ27628.1};
OS   Selaginella moellendorffii (Spikemoss).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX   NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN   [1] {ECO:0000313|EMBL:EFJ27628.1, ECO:0000313|Proteomes:UP000001514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=21551031; DOI=10.1126/science.1203810;
RA   Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA   dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA   Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA   Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA   Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA   Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA   Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA   Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA   Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA   Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA   Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA   Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA   Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA   Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA   Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA   Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA   Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA   Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT   "The Selaginella genome identifies genetic changes associated with the
RT   evolution of vascular plants.";
RL   Science 332:960-963(2011).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; GL377581; EFJ27628.1; -; Genomic_DNA.
DR   RefSeq; XP_002971030.1; XM_002970984.1.
DR   AlphaFoldDB; D8RJ16; -.
DR   EnsemblPlants; EFJ27628; EFJ27628; SELMODRAFT_94889.
DR   Gramene; EFJ27628; EFJ27628; SELMODRAFT_94889.
DR   KEGG; smo:SELMODRAFT_94889; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_6_1; -.
DR   InParanoid; D8RJ16; -.
DR   Proteomes; UP000001514; Unassembled WGS sequence.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 7.
DR   PANTHER; PTHR24015:SF2033; DYW_DEAMINASE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF01535; PPR; 5.
DR   Pfam; PF13041; PPR_2; 5.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 8.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          60..94
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          136..170
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          171..205
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          272..306
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          345..379
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          481..515
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          585..619
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          687..721
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   846 AA;  92269 MW;  04BC5489FB9DE649 CRC64;
     MLKLHGDAKN LDAGRAVHLQ MITSGYHRDR YLCNLLIQMY GRCRSVHDAI AVFHTVSRKN
     VFTWTILIVA HTHNGLFFEA VELFREMDVH GVQSDEFTFS AILEACSNLG LAFLSLGKTI
     HSRIHQQGLK LTSNPTVICS TAMIDAYAQN GHIEQAAEIF ERMQLQGLDP DLIAWTAMMT
     AYNQLGHARE ALLLFRKMDL QGLEPDRFAF VAAIDACSSI PSLEQGTVLH SRLLASSVEC
     DGVVGNALLN FYAKAGLVHE SRSLFSSMKV KNVVTWSAIV AAYAQNGHHE PAVELFREML
     LDGIAPNKVT IALLRIVEAC DQPDALDQAR ELHTRFFPGA AAAGDVVVAT ALVNMYGRCG
     SVSDAKTVFD EMQHRNITSW NAMLVTYSLN QRSLEALRFF RTMLLEGEGV KPDAITFVSA
     ADACGMMGDL SRAVEIHSRI SQSWPSNQTD VVLGSALIKM YGNCRSLAGA AQVLDEMPRT
     NVISWTSMIL ACEQNEDNEA AIHVYRAMQL HGHKPDPVTM VTVIKAAANL HDLKRGIEFH
     AQAAAFGFAT STVVGNALVT LYGTSGDLQA AENVFKELLQ QSVEDVVTWN SMLSAWNQNG
     LPNQALRTFQ RMLHHGRHPD KTTFVNILNA CAGDPSKLLQ AVKIHALAAA CGLDSDTDVA
     NTLLHMYSRC GNLSRARKVF HAITQKNVVS WSAMAAACAH NGDADGALQA FRGMLHGGIQ
     PNAVTFISIL SGCSHTGLMD EAVSYLYAMS SDHNLKPTVQ HYACLLDLLA RAGKFHRAEE
     LATHLPNPVA WNSLLGACLV HGDAETAARA ADTAAKLQPL DCAPYVSLSN AMSTGKNLKT
     KLNYFQ
//
DBGET integrated database retrieval system