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Database: UniProt
Entry: D8SAB9_SELML
LinkDB: D8SAB9_SELML
Original site: D8SAB9_SELML 
ID   D8SAB9_SELML            Unreviewed;      2030 AA.
AC   D8SAB9;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   24-JAN-2024, entry version 75.
DE   RecName: Full=RING-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=SELMODRAFT_444519 {ECO:0000313|EMBL:EFJ18575.1};
OS   Selaginella moellendorffii (Spikemoss).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX   NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN   [1] {ECO:0000313|EMBL:EFJ18575.1, ECO:0000313|Proteomes:UP000001514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=21551031; DOI=10.1126/science.1203810;
RA   Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA   dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA   Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA   Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA   Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA   Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA   Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA   Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA   Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA   Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA   Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA   Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA   Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA   Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA   Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA   Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA   Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA   Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT   "The Selaginella genome identifies genetic changes associated with the
RT   evolution of vascular plants.";
RL   Science 332:960-963(2011).
CC   -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC       {ECO:0000256|ARBA:ARBA00008438}.
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DR   EMBL; GL377609; EFJ18575.1; -; Genomic_DNA.
DR   RefSeq; XP_002980315.1; XM_002980269.1.
DR   STRING; 88036.D8SAB9; -.
DR   EnsemblPlants; EFJ18575; EFJ18575; SELMODRAFT_444519.
DR   Gramene; EFJ18575; EFJ18575; SELMODRAFT_444519.
DR   KEGG; smo:SELMODRAFT_444519; -.
DR   eggNOG; KOG0298; Eukaryota.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_001691_0_0_1; -.
DR   InParanoid; D8SAB9; -.
DR   Proteomes; UP000001514; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProt.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   CDD; cd18070; DEXQc_SHPRH; 1.
DR   CDD; cd18793; SF2_C_SNF; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 2.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR048686; SHPRH_helical_1st.
DR   InterPro; IPR048695; SHPRH_helical_2nd.
DR   InterPro; IPR038718; SNF2-like_sf.
DR   InterPro; IPR000330; SNF2_N.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR   InterPro; IPR018957; Znf_C3HC4_RING-type.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   InterPro; IPR017907; Znf_RING_CS.
DR   NCBIfam; TIGR00756; PPR; 3.
DR   PANTHER; PTHR45865:SF1; E3 UBIQUITIN-PROTEIN LIGASE SHPRH; 1.
DR   PANTHER; PTHR45865; E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF20826; PHD_5; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 3.
DR   Pfam; PF21325; SHPRH_helical-1st; 1.
DR   Pfam; PF21324; SHPRH_helical-2nd; 1.
DR   Pfam; PF00176; SNF2-rel_dom; 1.
DR   Pfam; PF00097; zf-C3HC4; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SMART; SM00249; PHD; 1.
DR   SMART; SM00184; RING; 1.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   SUPFAM; SSF57850; RING/U-box; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51375; PPR; 5.
DR   PROSITE; PS01359; ZF_PHD_1; 1.
DR   PROSITE; PS00518; ZF_RING_1; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   3: Inferred from homology;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00175}.
FT   DOMAIN          999..1049
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   DOMAIN          1096..1258
FT                   /note="Helicase C-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51194"
FT   REPEAT          1554..1588
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          1624..1658
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          1659..1693
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          1694..1728
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          1764..1799
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   2030 AA;  230059 MW;  FC7D4A051EA5C0E9 CRC64;
     MLRRSLQSLI VWLRPELSID FFYGPETRSK SQNEVFDPSS LYRGVQRQRD EPCWSVALEG
     LLPELRTYQQ QAVFWMVQRE TADPAVEEVV RKRHPLWVLV ESLDKEKSFY YNVFNGMVSR
     EPRDCCSYVR GGILADEMGL GKTVEVLACI LANRHEGPAM WEPAVEKLQH RLDDRKNERV
     ECICGDDDAG GMMVQCDHCH VWQHTSCVGY SPPKKKKTRK SKEADEDDNA FACDGCFEVI
     ASTEVEGVCG ATLIVCPTAI LKQWQEEIVR HTKLDAVKVL VYEGVRRGCI TLGEKNSCLR
     KVGAHDLAAA DVVITTYDVL QADLCHDIEE ENQQTLRFEK KYHVIATPLT RLKWWRICLD
     EAQMVESSTA KATEMAMRLH AENKWCVSGT PIQRGLDDLY GLLRFLQAEP FDNHTWWQQA
     IKHPYEEGKM GAVDFVHFFF REIMWRSMKI DVIDQLDIPP QEERITWLKF SGVENHFYRQ
     QHEQCVKRAR EVIEKYSLGD GRPLNHMDAS KLMNPLLRLR QACCHPQVGS SGVRSLQASP
     LPMDEVLEVL IEKAKTEGEE AQRDLVASLN GLAGLAIIEE NIPMAVSIYR EALAATEENA
     TNFEVDPLQK VHILHNLEES LRNCKDDALS KIPRTLRDDM LISQCDELRK KYVSGQYANL
     AAAQQDFYAA HKEIASAQSH DKSSRWSRWW LDAFAWVQSS SQRSDHLLER IKHGLEDVNR
     AGGRNASSLV LRYHDLNGLK FLLSQELDAI HETRDHVLSR LLEVDGGMQN PNPDYVQRAG
     QCSQCQPRHT GITCVHCAID LMFQKYANRL FYLTSRAAEL DGIVTAEDAF VSQVRSLVKG
     NKETETNTGR RKGAAVAAVT HRCSETEMVL KILLAYMKAE TNLEEDEIEA AKKHLEYLEA
     LRSEYAAARR LTTAQQLVLT ALDELSMSTT RLCLQGAKAA DGNPFGDEGY EIAIRNAELT
     NEKFVAVENL SRVKRQLRYL KGLRNKKDEG HNSLEGEICP VCHDGIESGA MVLPCGHLLC
     GKCLNLIVNR QKAPANGADF KRIACPTCRQ QTYVSNIAYA NAEGTSSKIA ENLQEEEEDE
     EKSITVAGSY GTKIEAVVRR ILSLKEDDPF VKILVFSTWQ EVLDLLEHAL KSNKLSWVRL
     KQRRQMGSSI LEFKKENVQV MLLPIQHGAN GLNLIEAQHV ILVEPLLNPA VEAQAINRVH
     RIGQRLKTLV HRFILLVLLL NRGSCDYRPT LAYRFLLATE MGAKFQPLPR FYWTKEQIAA
     IRDLCRDDDL YVKTKYGRKL RPPPRPRLSR EQERFVRADP QAGLDRISGQ WVALQHQLGK
     KPYTAEEQEG NYVGPILGHK QYRRELHLHR GQKQWNVHAV GDKFLVYETL PPATDTGDDP
     PVLCGRDKFV IGRPLSVTMD NRATNVSSSW NSFPVWSLPE EGKEGTIALP GNYMVPSSKV
     ALPGLVPGKG ALVFDALYET VKEGGASWSS EMVEKLDRLK RGITHPHQVC VVLKKIKHDA
     SLSLKLFTWA KTIPGFKHDL VNYSTMIMIL GDDGNYLMAE ALFVEIQELG LRLDTFAVNN
     MIRCYTRVNR IQEALDLYRK MPYFGCHPDN CTFGLLIDWC GKFGSRKELQ RIFLDLRASP
     RNADAQTFNT MIHNFCKQRD FANAREAANQ MKAWGIPFSS ATYAILIHMY AKARDSKAAA
     ELYADYLRSG LEPNLIVYNN VILSYGSSGF PGHAQNILGD IRKAGLAPDR FTYCTLISSW
     ARAGAMLQAR RWFNKACKTK AGPSIEMCNA LIDGYLKARE VEPAKFILTK VMPERGVEPT
     LQTYTILLGH YTSSVKVADS RAVREMMKSS SKPAAAAAGR GGGDDHPGVD EFLNEILQGL
     RAIKELKSYS REFFRKLRMD KPPRWGRWLA DALVNHLHCF GYAREAFYVW EGVSSTELYP
     RGIWEDWQGA WFIWLQDMSS GTAMVALTSG LIVSRRKLAR GFERPERVII VCGYASDKSK
     EVTHAVNRTL VALDSPFEPF ISMGRFMCEG NLFRDWLWEK QVAIELTMDA
//
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