ID D8SED3_SELML Unreviewed; 611 AA.
AC D8SED3;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 08-NOV-2023, entry version 53.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=SELMODRAFT_444974 {ECO:0000313|EMBL:EFJ17272.1};
OS Selaginella moellendorffii (Spikemoss).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN [1] {ECO:0000313|EMBL:EFJ17272.1, ECO:0000313|Proteomes:UP000001514}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=21551031; DOI=10.1126/science.1203810;
RA Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT "The Selaginella genome identifies genetic changes associated with the
RT evolution of vascular plants.";
RL Science 332:960-963(2011).
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DR EMBL; GL377615; EFJ17272.1; -; Genomic_DNA.
DR RefSeq; XP_002981790.1; XM_002981744.1.
DR AlphaFoldDB; D8SED3; -.
DR EnsemblPlants; EFJ17272; EFJ17272; SELMODRAFT_444974.
DR GeneID; 9648273; -.
DR Gramene; EFJ17272; EFJ17272; SELMODRAFT_444974.
DR KEGG; smo:SELMODRAFT_444974; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_8_1; -.
DR InParanoid; D8SED3; -.
DR OrthoDB; 877446at2759; -.
DR Proteomes; UP000001514; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 5.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 96..130
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 170..200
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 202..232
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 273..303
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 304..338
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 519..611
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 611 AA; 68386 MW; 04E076AE7AF013F9 CRC64;
MAAFSHNGCH SEALVFFRRM YQSGERPDRV TFSVILAAIA QMGAAAIDQG REIHRYARIS
GLLPNVVVGT AVISMYGKCG RLDDARAAFE ELQWKNSVTW NAMMTNYKLD GRDREALELF
REMCERSRSA RPDKFSFSIA IEACSNLEDL EQGREIHEML RREGKELHKD VVVGTALLNM
YSKCGDLEEA RKVFDSIRHD ADSVCWNAMI AAYAQHGRGK QALDLYRSMH DTTDLAPKQG
TFVTVIDVCA ELSALKQGRA IHARVRATNF DANLLVSNAL VHMYGKCGCL DEALDVFHSM
KLKDEISWNT IISSYAYHGH SDQALLLYQE MDLQGVKPTE VTFVGLLSAC SHGGLVADGL
DYFYRMQDDH RIKPSVPHFG CIIDLLGRGG RLAEAELVLK SMPIQANAVQ WMSLLGACKT
HGDLKRGVRA ADQVVDRVPW TSGGYVLLSN IYAAAGRWKD VEKIRKIMAA RGVKKSPGKS
WIEIGDVVHE FVSGDRSHPQ GEEIYVELGK MVEEMKGLGY VPDTSSVFHD LEEEEKEDLL
VCHSEKLAIV YGNMVVPGKS MLRIVKNLRV CLDCHTATKF MSRITGRKIV VRDAARFHLF
ENGSCSCRDY W
//