GenomeNet

Database: UniProt
Entry: D8SED3_SELML
LinkDB: D8SED3_SELML
Original site: D8SED3_SELML 
ID   D8SED3_SELML            Unreviewed;       611 AA.
AC   D8SED3;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   08-NOV-2023, entry version 53.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   ORFNames=SELMODRAFT_444974 {ECO:0000313|EMBL:EFJ17272.1};
OS   Selaginella moellendorffii (Spikemoss).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella.
OX   NCBI_TaxID=88036 {ECO:0000313|Proteomes:UP000001514};
RN   [1] {ECO:0000313|EMBL:EFJ17272.1, ECO:0000313|Proteomes:UP000001514}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=21551031; DOI=10.1126/science.1203810;
RA   Banks J.A., Nishiyama T., Hasebe M., Bowman J.L., Gribskov M.,
RA   dePamphilis C., Albert V.A., Aono N., Aoyama T., Ambrose B.A., Ashton N.W.,
RA   Axtell M.J., Barker E., Barker M.S., Bennetzen J.L., Bonawitz N.D.,
RA   Chapple C., Cheng C., Correa L.G., Dacre M., DeBarry J., Dreyer I.,
RA   Elias M., Engstrom E.M., Estelle M., Feng L., Finet C., Floyd S.K.,
RA   Frommer W.B., Fujita T., Gramzow L., Gutensohn M., Harholt J., Hattori M.,
RA   Heyl A., Hirai T., Hiwatashi Y., Ishikawa M., Iwata M., Karol K.G.,
RA   Koehler B., Kolukisaoglu U., Kubo M., Kurata T., Lalonde S., Li K., Li Y.,
RA   Litt A., Lyons E., Manning G., Maruyama T., Michael T.P., Mikami K.,
RA   Miyazaki S., Morinaga S., Murata T., Mueller-Roeber B., Nelson D.R.,
RA   Obara M., Oguri Y., Olmstead R.G., Onodera N., Petersen B.L., Pils B.,
RA   Prigge M., Rensing S.A., Riano-Pachon D.M., Roberts A.W., Sato Y.,
RA   Scheller H.V., Schulz B., Schulz C., Shakirov E.V., Shibagaki N.,
RA   Shinohara N., Shippen D.E., Soerensen I., Sotooka R., Sugimoto N.,
RA   Sugita M., Sumikawa N., Tanurdzic M., Theissen G., Ulvskov P., Wakazuki S.,
RA   Weng J.K., Willats W.W., Wipf D., Wolf P.G., Yang L., Zimmer A.D., Zhu Q.,
RA   Mitros T., Hellsten U., Loque D., Otillar R., Salamov A., Schmutz J.,
RA   Shapiro H., Lindquist E., Lucas S., Rokhsar D., Grigoriev I.V.;
RT   "The Selaginella genome identifies genetic changes associated with the
RT   evolution of vascular plants.";
RL   Science 332:960-963(2011).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; GL377615; EFJ17272.1; -; Genomic_DNA.
DR   RefSeq; XP_002981790.1; XM_002981744.1.
DR   AlphaFoldDB; D8SED3; -.
DR   EnsemblPlants; EFJ17272; EFJ17272; SELMODRAFT_444974.
DR   GeneID; 9648273; -.
DR   Gramene; EFJ17272; EFJ17272; SELMODRAFT_444974.
DR   KEGG; smo:SELMODRAFT_444974; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_37_8_1; -.
DR   InParanoid; D8SED3; -.
DR   OrthoDB; 877446at2759; -.
DR   Proteomes; UP000001514; Unassembled WGS sequence.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR046849; Eplus_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF20430; Eplus_motif; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 3.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000001514};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          96..130
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          170..200
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          202..232
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          273..303
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          304..338
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          519..611
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   611 AA;  68386 MW;  04E076AE7AF013F9 CRC64;
     MAAFSHNGCH SEALVFFRRM YQSGERPDRV TFSVILAAIA QMGAAAIDQG REIHRYARIS
     GLLPNVVVGT AVISMYGKCG RLDDARAAFE ELQWKNSVTW NAMMTNYKLD GRDREALELF
     REMCERSRSA RPDKFSFSIA IEACSNLEDL EQGREIHEML RREGKELHKD VVVGTALLNM
     YSKCGDLEEA RKVFDSIRHD ADSVCWNAMI AAYAQHGRGK QALDLYRSMH DTTDLAPKQG
     TFVTVIDVCA ELSALKQGRA IHARVRATNF DANLLVSNAL VHMYGKCGCL DEALDVFHSM
     KLKDEISWNT IISSYAYHGH SDQALLLYQE MDLQGVKPTE VTFVGLLSAC SHGGLVADGL
     DYFYRMQDDH RIKPSVPHFG CIIDLLGRGG RLAEAELVLK SMPIQANAVQ WMSLLGACKT
     HGDLKRGVRA ADQVVDRVPW TSGGYVLLSN IYAAAGRWKD VEKIRKIMAA RGVKKSPGKS
     WIEIGDVVHE FVSGDRSHPQ GEEIYVELGK MVEEMKGLGY VPDTSSVFHD LEEEEKEDLL
     VCHSEKLAIV YGNMVVPGKS MLRIVKNLRV CLDCHTATKF MSRITGRKIV VRDAARFHLF
     ENGSCSCRDY W
//
DBGET integrated database retrieval system