GenomeNet

Database: UniProt
Entry: D8TPI4_VOLCA
LinkDB: D8TPI4_VOLCA
Original site: D8TPI4_VOLCA 
ID   D8TPI4_VOLCA            Unreviewed;      3230 AA.
AC   D8TPI4;
DT   05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT   05-OCT-2010, sequence version 1.
DT   24-JAN-2024, entry version 56.
DE   RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
GN   ORFNames=VOLCADRAFT_103835 {ECO:0000313|EMBL:EFJ50621.1};
OS   Volvox carteri f. nagariensis.
OC   Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae;
OC   CS clade; Chlamydomonadales; Volvocaceae; Volvox.
OX   NCBI_TaxID=3068 {ECO:0000313|Proteomes:UP000001058};
RN   [1] {ECO:0000313|EMBL:EFJ50621.1, ECO:0000313|Proteomes:UP000001058}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=f. Nagariensis / Eve {ECO:0000313|Proteomes:UP000001058};
RX   PubMed=20616280; DOI=10.1126/science.1188800;
RA   Prochnik S.E., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., Nishii I.,
RA   Ferris P., Kuo A., Mitros T., Fritz-Laylin L.K., Hellsten U., Chapman J.,
RA   Simakov O., Rensing S.A., Terry A., Pangilinan J., Kapitonov V., Jurka J.,
RA   Salamov A., Shapiro H., Schmutz J., Grimwood J., Lindquist E., Lucas S.,
RA   Grigoriev I.V., Schmitt R., Kirk D., Rokhsar D.S.;
RT   "Genomic analysis of organismal complexity in the multicellular green alga
RT   Volvox carteri.";
RL   Science 329:223-226(2010).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; GL378330; EFJ50621.1; -; Genomic_DNA.
DR   RefSeq; XP_002948214.1; XM_002948168.1.
DR   STRING; 3068.D8TPI4; -.
DR   GeneID; 9624361; -.
DR   KEGG; vcn:VOLCADRAFT_103835; -.
DR   eggNOG; KOG4299; Eukaryota.
DR   InParanoid; D8TPI4; -.
DR   OrthoDB; 315881at2759; -.
DR   Proteomes; UP000001058; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   CDD; cd15504; PHD_PRHA_like; 1.
DR   Gene3D; 2.30.30.1150; -; 1.
DR   InterPro; IPR045876; PRHA-like_PHD-finger.
DR   InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   PANTHER; PTHR12628:SF10; C. ELEGANS HOMEOBOX; 1.
DR   PANTHER; PTHR12628; POLYCOMB-LIKE TRANSCRIPTION FACTOR; 1.
DR   Pfam; PF00628; PHD; 1.
DR   SMART; SM00249; PHD; 1.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR   PROSITE; PS01359; ZF_PHD_1; 1.
DR   PROSITE; PS50016; ZF_PHD_2; 1.
PE   4: Predicted;
KW   Homeobox {ECO:0000256|ARBA:ARBA00023155};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001058};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00146}.
FT   TRANSMEM        3029..3051
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        3057..3079
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          2133..2189
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   REGION          106..148
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          244..321
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          419..523
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          640..661
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          740..792
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1041..1069
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1131..1165
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1219..1366
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1394..1483
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1510..1628
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1720..2040
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          2221..2398
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          2417..2440
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          2902..2929
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        129..143
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        248..273
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        419..436
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        446..467
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        468..482
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        483..523
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        741..760
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1054..1069
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1246..1282
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1419..1448
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1450..1465
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1525..1559
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1601..1628
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1720..1740
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1782..1818
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1834..1855
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1856..1894
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2006..2023
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2026..2040
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2275..2302
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2327..2391
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   3230 AA;  335933 MW;  CFDF2FC90BC0E3E0 CRC64;
     MDLNLMRALG GQAMELYAQS FREGPPEEPD YKRHRVLQTQ PPRGHDGTQQ YASAEALMAA
     PVDDVKPTYR QQVYDQAPMG PFQGMLGYMA HQQARVSQLP PGYAVNPAHV PIGDQPPYSE
     YSDGNPLPPK RRSRPPGLKP RPGVGPLAPG MGYADDAYAD DAYEGYDPAD GEGLSGSDAL
     YGADPATAAM LAATRGRKRK PFRPMAAQPL GIPMHATGDV DYEQQAAVVS AEQLPYARRI
     MGNMQNVPQA PPPQPPQPQP PPQPQPQPQQ TQPAPPRGGL LSGAVPYPRG MVLLDPQGMP
     VRRGRGRPRK DYPPGYRLVP ADSVPPEVLA AVQGTDEVEE PAGDAAEAAA AAAANAAAAG
     GSGGISNELL AAWTGIDPSM VGVGVGGGPP QSRRNPDDLW AQEAASLAAA RRQQQQYQLQ
     LQQQQLQEPS SLQSHHHHQQ QQHHHHHQQL LLQQQQQQQQ QQHQQQQQQQ HHHHHHQQQQ
     QQQQHHHHYQ QQQHQQQTPQ HHHHQQQQQQ QHHHHQQQAV GQGSMQAYRG GINLQLPNGA
     QLGGGGGLGA YNLPNEQVSS MDAVVAAAMA AMAKAAAAAA SSGNGAPRQM SLPAMMTSAS
     GLRPGGDGGG GVHPPGGNAG IDGNRYGGLY YEGQRGMGGG AGSNVPGGPM GPGGFPPGRS
     GGPCGDLSYG MAGYVNGYWS TEEGSNGRGG AADGLHVSDC DAATGSHSRD ASAPAYPSTT
     AQCGLVAADG FVADGGCRYG DDGGARGRGR SRRDRSLPPG DATPRDGTWP CAADSEDDGS
     HGGDATPRTG GGDCAMGSAA GWIIPQYDGA DDDFIMSGGF SATAAVRGTS PALPSAVTLA
     GLVSQHPHTA AAPGMYYNGT GLLGGGAGSL GGVPWSSGPA GQLTADLLPA GMAGFPMSTL
     PYATGAGAAP GAHTMVPTHA VGGAAGGGFL GMGVCGVQLT AAEQVAALRQ QQQQQPAAFF
     PHFVPDNRAG MALPQIQQMQ QQKLATVGSL GLGTAGLMAT QGGTGTLAAN DPRVFKPLAA
     AGTVSAAGLT ASQSALTDAL AGSGGGGAGS GAVTTAGPTG STRSHGHELH QFNPGLQAQQ
     QQQLLLHQHI QPIQQQNQPF NELAGGLSSI KALAAKPAHL QLQPHVIGTA SAKAAAPPKP
     DPAHAKPEPS GPVAQANGGG VGGGRQAVDV AALTAGGRPR RSAPVPARFA DAPLFSRHQG
     GGSGGGAVAA AAALRTKAAK VSDGGSDGGA KPPKRRPTPS GEEDDGAEGA AAEDSEEEAE
     EGEKEEEAEE DEEEEDEEEE ASDGELRRAA ARPSGSSRRG QQQGKAPVGW DAGQAQLSEE
     AEAKRQAHLA RRREAARRMR REAAEQRLKM KQEQQQPNGD IGPQVPAAAG DIAAAIIAAA
     AQDAAAQVLT AAGVGNSDAN GDLEADAWQK QQQAQAKQSA AERHERDLAR RRERERQRRA
     ELRKLREAGQ LQKPQQQQQP QPQQGPAGDA PIPLPDPEAT GPVAMIAAAP ALPQVSTVPV
     VEPVPATAAA TVNASGSAGI GNRALTPEER REQQLARRRE RERRQRLELR MRREEQQKEA
     TTATAQLASS DQDALLTGDG EDGAPSEAGE AKPVTAPTSG DGAANAVTGG ASSGGGGTAN
     GSGVQNAQSN SPAAVAAAVV ASKAPDLKLL PPAAGPAAPT PALAPTPLAA TTTTLQSLPF
     ALSAAAAALA GIKAPPGSII IPLAGLPPLI LPPPLPPSNG GPIVRLPPPS RPPTMVPSPA
     PAPATAGTSA GIGAGGGGGG GSASGGEAAG SPSGTKRPRQ KFNGTPTEKR ERELAVKRER
     ERQRRLRLKQ ERMARQFGEG GDGGDGGGGG GVSTGTGRPT SSAAAAGGSD YTTSSGMGRH
     HRHDDDGAED GEGELRRGDA DGGEEHDSGR QRPPQRSKRE RRPPRRSDDM ATGSGSEESG
     DDADGDGTGD GNESASDGGD GGNRRMAGTA RAAAGEGGAW APAGAGGSGG VKSVAMGGAA
     EQQRREQALA AKRERERQQR RERKRRRLAD GRDKSEAGSD GEHDNDNGTP PPSSAPQKGN
     SVAFYRQLLR RVKRQVQHIK QEEHALAVYA AEGWRGGARK KVQLTYEMQR SRVALERRRA
     AIREALALCD APPGLRSIPA ELFDEEGELE EHHIFCAVCY SYEMADDDDV ILCDGPCNCA
     FHQNCLDPPV DVSKLPEDEG WLCPACDCKA DILDILYEEF GIEYDINEPW MNILPPSAHQ
     LDECLEGGEP ETEGAGGSED DDGGDKRRRR RRPRRSVKPP PPGAAPVASG WLAEDLPSED
     EEDEDFAAAP SEAGSEGEGE EDGGDGGASK QDDAPDMAVN GDSEQAGGEE GEGEEGEEGS
     EEDDEDEDGD SDDAMEDLEE ESDLSGLGED EDDELGSDAE EEEEAAGEGD EGEMVMEGKR
     QRKQVNYAEL HKQLFGVAPA PPGEDELEED DDYNPDIFSP GPKRARSLGC GVWPGRRFAE
     RGILLGFLRG FVLSGPDRLG RSFMRVSRVS SKLSVAMDPT ALLFATPHLA PLLVTNQAFR
     SGAPPRAGHG VLLCRASAVL DKSSKAVPAN VVLPPSLRNN VALLEAPNPT SPDGTTRVYL
     LAMSHVSKRS VEQVGELIRL VKPDVVAVEL CKERSGLLVD PEDASKPPKI WHSRKIRIEG
     LPGEGVGGSG GGEAGEPGGV WPREEELLEL LVCRPGRPVT QQDIEGDVMR LLSTGLFASA
     RPGASNAGRD EAPGFLVRPP SGTGGDGEGR SLVLVPPLGC IRFKVQPRSL PAVTALSVRV
     DSSLKVRRGA RDRVGGVEEK NVPVDLAALR DICLQATDEG RKGTSGMLTL LRTRSRVMEL
     TAGHKVTVSF TGVDTGRVEM IVKAVKPVDP PYMSGLEGTA VGGEGFGIEP FRPQRGLFQV
     SKKMFIPQET LDRMRAGRLG AAAAAAEEGA QGEGEGGTSG NPSTTAGGRV WPRVRAALRP
     WTAEELAAVK QDEPPRRVVQ DTLAQLMSTA YARIQSKAGR TVGLEPGAAW RAALEAATSV
     GCGTVVLADR PSNVTQHRMG AGLAADTGVR LGGAVALTLG SLLLALGTSL LPDDADGGVL
     AAGLAAAVAV VGPVLGPYIE VSRFADMSEE QIEDAVAVKE PIDQGDLSKP LRLFGEDALL
     DWPGAFQALI PERDSFMAKA IAAMASGKPG VAPAYVLDEV DGKMVWRYVM PEGGPQRSAP
     QGVGDGALRG LSGVRTVVGV VGSAHVRGMV RGWPEALQDG DVVPLLQDME
//
DBGET integrated database retrieval system