ID D8TPI4_VOLCA Unreviewed; 3230 AA.
AC D8TPI4;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 24-JAN-2024, entry version 56.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
GN ORFNames=VOLCADRAFT_103835 {ECO:0000313|EMBL:EFJ50621.1};
OS Volvox carteri f. nagariensis.
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae;
OC CS clade; Chlamydomonadales; Volvocaceae; Volvox.
OX NCBI_TaxID=3068 {ECO:0000313|Proteomes:UP000001058};
RN [1] {ECO:0000313|EMBL:EFJ50621.1, ECO:0000313|Proteomes:UP000001058}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=f. Nagariensis / Eve {ECO:0000313|Proteomes:UP000001058};
RX PubMed=20616280; DOI=10.1126/science.1188800;
RA Prochnik S.E., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., Nishii I.,
RA Ferris P., Kuo A., Mitros T., Fritz-Laylin L.K., Hellsten U., Chapman J.,
RA Simakov O., Rensing S.A., Terry A., Pangilinan J., Kapitonov V., Jurka J.,
RA Salamov A., Shapiro H., Schmutz J., Grimwood J., Lindquist E., Lucas S.,
RA Grigoriev I.V., Schmitt R., Kirk D., Rokhsar D.S.;
RT "Genomic analysis of organismal complexity in the multicellular green alga
RT Volvox carteri.";
RL Science 329:223-226(2010).
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DR EMBL; GL378330; EFJ50621.1; -; Genomic_DNA.
DR RefSeq; XP_002948214.1; XM_002948168.1.
DR STRING; 3068.D8TPI4; -.
DR GeneID; 9624361; -.
DR KEGG; vcn:VOLCADRAFT_103835; -.
DR eggNOG; KOG4299; Eukaryota.
DR InParanoid; D8TPI4; -.
DR OrthoDB; 315881at2759; -.
DR Proteomes; UP000001058; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd15504; PHD_PRHA_like; 1.
DR Gene3D; 2.30.30.1150; -; 1.
DR InterPro; IPR045876; PRHA-like_PHD-finger.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR PANTHER; PTHR12628:SF10; C. ELEGANS HOMEOBOX; 1.
DR PANTHER; PTHR12628; POLYCOMB-LIKE TRANSCRIPTION FACTOR; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Homeobox {ECO:0000256|ARBA:ARBA00023155};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000001058};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT TRANSMEM 3029..3051
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 3057..3079
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 2133..2189
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 106..148
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 244..321
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 419..523
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 640..661
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 740..792
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1041..1069
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1131..1165
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1219..1366
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1394..1483
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1510..1628
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1720..2040
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2221..2398
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2417..2440
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2902..2929
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 129..143
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 248..273
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 419..436
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 446..467
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 468..482
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 483..523
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 741..760
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1054..1069
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1246..1282
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1419..1448
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1450..1465
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1525..1559
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1601..1628
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1720..1740
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1782..1818
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1834..1855
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1856..1894
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2006..2023
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2026..2040
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2275..2302
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2327..2391
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 3230 AA; 335933 MW; CFDF2FC90BC0E3E0 CRC64;
MDLNLMRALG GQAMELYAQS FREGPPEEPD YKRHRVLQTQ PPRGHDGTQQ YASAEALMAA
PVDDVKPTYR QQVYDQAPMG PFQGMLGYMA HQQARVSQLP PGYAVNPAHV PIGDQPPYSE
YSDGNPLPPK RRSRPPGLKP RPGVGPLAPG MGYADDAYAD DAYEGYDPAD GEGLSGSDAL
YGADPATAAM LAATRGRKRK PFRPMAAQPL GIPMHATGDV DYEQQAAVVS AEQLPYARRI
MGNMQNVPQA PPPQPPQPQP PPQPQPQPQQ TQPAPPRGGL LSGAVPYPRG MVLLDPQGMP
VRRGRGRPRK DYPPGYRLVP ADSVPPEVLA AVQGTDEVEE PAGDAAEAAA AAAANAAAAG
GSGGISNELL AAWTGIDPSM VGVGVGGGPP QSRRNPDDLW AQEAASLAAA RRQQQQYQLQ
LQQQQLQEPS SLQSHHHHQQ QQHHHHHQQL LLQQQQQQQQ QQHQQQQQQQ HHHHHHQQQQ
QQQQHHHHYQ QQQHQQQTPQ HHHHQQQQQQ QHHHHQQQAV GQGSMQAYRG GINLQLPNGA
QLGGGGGLGA YNLPNEQVSS MDAVVAAAMA AMAKAAAAAA SSGNGAPRQM SLPAMMTSAS
GLRPGGDGGG GVHPPGGNAG IDGNRYGGLY YEGQRGMGGG AGSNVPGGPM GPGGFPPGRS
GGPCGDLSYG MAGYVNGYWS TEEGSNGRGG AADGLHVSDC DAATGSHSRD ASAPAYPSTT
AQCGLVAADG FVADGGCRYG DDGGARGRGR SRRDRSLPPG DATPRDGTWP CAADSEDDGS
HGGDATPRTG GGDCAMGSAA GWIIPQYDGA DDDFIMSGGF SATAAVRGTS PALPSAVTLA
GLVSQHPHTA AAPGMYYNGT GLLGGGAGSL GGVPWSSGPA GQLTADLLPA GMAGFPMSTL
PYATGAGAAP GAHTMVPTHA VGGAAGGGFL GMGVCGVQLT AAEQVAALRQ QQQQQPAAFF
PHFVPDNRAG MALPQIQQMQ QQKLATVGSL GLGTAGLMAT QGGTGTLAAN DPRVFKPLAA
AGTVSAAGLT ASQSALTDAL AGSGGGGAGS GAVTTAGPTG STRSHGHELH QFNPGLQAQQ
QQQLLLHQHI QPIQQQNQPF NELAGGLSSI KALAAKPAHL QLQPHVIGTA SAKAAAPPKP
DPAHAKPEPS GPVAQANGGG VGGGRQAVDV AALTAGGRPR RSAPVPARFA DAPLFSRHQG
GGSGGGAVAA AAALRTKAAK VSDGGSDGGA KPPKRRPTPS GEEDDGAEGA AAEDSEEEAE
EGEKEEEAEE DEEEEDEEEE ASDGELRRAA ARPSGSSRRG QQQGKAPVGW DAGQAQLSEE
AEAKRQAHLA RRREAARRMR REAAEQRLKM KQEQQQPNGD IGPQVPAAAG DIAAAIIAAA
AQDAAAQVLT AAGVGNSDAN GDLEADAWQK QQQAQAKQSA AERHERDLAR RRERERQRRA
ELRKLREAGQ LQKPQQQQQP QPQQGPAGDA PIPLPDPEAT GPVAMIAAAP ALPQVSTVPV
VEPVPATAAA TVNASGSAGI GNRALTPEER REQQLARRRE RERRQRLELR MRREEQQKEA
TTATAQLASS DQDALLTGDG EDGAPSEAGE AKPVTAPTSG DGAANAVTGG ASSGGGGTAN
GSGVQNAQSN SPAAVAAAVV ASKAPDLKLL PPAAGPAAPT PALAPTPLAA TTTTLQSLPF
ALSAAAAALA GIKAPPGSII IPLAGLPPLI LPPPLPPSNG GPIVRLPPPS RPPTMVPSPA
PAPATAGTSA GIGAGGGGGG GSASGGEAAG SPSGTKRPRQ KFNGTPTEKR ERELAVKRER
ERQRRLRLKQ ERMARQFGEG GDGGDGGGGG GVSTGTGRPT SSAAAAGGSD YTTSSGMGRH
HRHDDDGAED GEGELRRGDA DGGEEHDSGR QRPPQRSKRE RRPPRRSDDM ATGSGSEESG
DDADGDGTGD GNESASDGGD GGNRRMAGTA RAAAGEGGAW APAGAGGSGG VKSVAMGGAA
EQQRREQALA AKRERERQQR RERKRRRLAD GRDKSEAGSD GEHDNDNGTP PPSSAPQKGN
SVAFYRQLLR RVKRQVQHIK QEEHALAVYA AEGWRGGARK KVQLTYEMQR SRVALERRRA
AIREALALCD APPGLRSIPA ELFDEEGELE EHHIFCAVCY SYEMADDDDV ILCDGPCNCA
FHQNCLDPPV DVSKLPEDEG WLCPACDCKA DILDILYEEF GIEYDINEPW MNILPPSAHQ
LDECLEGGEP ETEGAGGSED DDGGDKRRRR RRPRRSVKPP PPGAAPVASG WLAEDLPSED
EEDEDFAAAP SEAGSEGEGE EDGGDGGASK QDDAPDMAVN GDSEQAGGEE GEGEEGEEGS
EEDDEDEDGD SDDAMEDLEE ESDLSGLGED EDDELGSDAE EEEEAAGEGD EGEMVMEGKR
QRKQVNYAEL HKQLFGVAPA PPGEDELEED DDYNPDIFSP GPKRARSLGC GVWPGRRFAE
RGILLGFLRG FVLSGPDRLG RSFMRVSRVS SKLSVAMDPT ALLFATPHLA PLLVTNQAFR
SGAPPRAGHG VLLCRASAVL DKSSKAVPAN VVLPPSLRNN VALLEAPNPT SPDGTTRVYL
LAMSHVSKRS VEQVGELIRL VKPDVVAVEL CKERSGLLVD PEDASKPPKI WHSRKIRIEG
LPGEGVGGSG GGEAGEPGGV WPREEELLEL LVCRPGRPVT QQDIEGDVMR LLSTGLFASA
RPGASNAGRD EAPGFLVRPP SGTGGDGEGR SLVLVPPLGC IRFKVQPRSL PAVTALSVRV
DSSLKVRRGA RDRVGGVEEK NVPVDLAALR DICLQATDEG RKGTSGMLTL LRTRSRVMEL
TAGHKVTVSF TGVDTGRVEM IVKAVKPVDP PYMSGLEGTA VGGEGFGIEP FRPQRGLFQV
SKKMFIPQET LDRMRAGRLG AAAAAAEEGA QGEGEGGTSG NPSTTAGGRV WPRVRAALRP
WTAEELAAVK QDEPPRRVVQ DTLAQLMSTA YARIQSKAGR TVGLEPGAAW RAALEAATSV
GCGTVVLADR PSNVTQHRMG AGLAADTGVR LGGAVALTLG SLLLALGTSL LPDDADGGVL
AAGLAAAVAV VGPVLGPYIE VSRFADMSEE QIEDAVAVKE PIDQGDLSKP LRLFGEDALL
DWPGAFQALI PERDSFMAKA IAAMASGKPG VAPAYVLDEV DGKMVWRYVM PEGGPQRSAP
QGVGDGALRG LSGVRTVVGV VGSAHVRGMV RGWPEALQDG DVVPLLQDME
//