ID E0CUJ7_VITVI Unreviewed; 518 AA.
AC E0CUJ7;
DT 05-OCT-2010, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2010, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE RecName: Full=RNA polymerase sigma factor sigE, chloroplastic/mitochondrial {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=VIT_16s0050g02520 {ECO:0000313|EMBL:CBI22546.3};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CBI22546.3, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
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DR EMBL; FN595243; CBI22546.3; -; Genomic_DNA.
DR RefSeq; XP_002268709.1; XM_002268673.3.
DR AlphaFoldDB; E0CUJ7; -.
DR STRING; 29760.E0CUJ7; -.
DR PaxDb; 29760-VIT_16s0050g02520-t01; -.
DR EnsemblPlants; Vitvi16g01214_t001; Vitvi16g01214_P001; Vitvi16g01214.
DR GeneID; 100250120; -.
DR Gramene; Vitvi16g01214_t001; Vitvi16g01214_P001; Vitvi16g01214.
DR KEGG; vvi:100250120; -.
DR eggNOG; ENOG502QRMD; Eukaryota.
DR HOGENOM; CLU_014793_3_4_1; -.
DR InParanoid; E0CUJ7; -.
DR OMA; RVALKWN; -.
DR OrthoDB; 33789at2759; -.
DR Proteomes; UP000009183; Chromosome 16.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 3.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF4; RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC_MITOCHONDRIAL; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 2.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 240..279
FT /note="RNA polymerase sigma-70 region 3"
FT /evidence="ECO:0000259|Pfam:PF04539"
FT DOMAIN 284..350
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 368..432
FT /note="RNA polymerase sigma-70 region 3"
FT /evidence="ECO:0000259|Pfam:PF04539"
FT DOMAIN 453..506
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
SQ SEQUENCE 518 AA; 58935 MW; B17FD7C14E3F01C5 CRC64;
MGVVTVSSSA SASRTPFGLN AKFSNHQTPL RRPLVLAFKA DKAKNIALVT PHEPIPLPIE
TSKDHKKRLR RASKPSKRVK AVSTDEVSPC SVELDYNEAA AKLENIYKLS PATDVSEAED
LERVVRRGRQ RRKRVTLADD KAEKEVSDNV VRIHNKKPKR LSLEKRIALS KMKQEKAVAS
IQKKRDSKNE DENIDVLVRE YSASTDLVSL DWKKMKIPPV LPPSEHAWLF KLMQPMKGLL
EVKDNLQKDL GREPTDGELA EAMSMSAVQV RRHMEVGQAA RNKLIKHNLR LVLFVINKYF
QEFANGPKFQ DLCQAGVKGL ITAIDRFEPK RSFRLSTYGL FWIRHAIMRS MTLSSFTRVS
FGLESVRVEI QRAKLELLFK LQRLPTEEEI IEKVGISPER YHEVMRASKS VLSLHARHAT
TQEEYINGIT DVEGVGGDRG RQLALLRLAL DDVLDSLKPK ESLVMRQRYG LDGKGDRTLG
EIAGNLSISR EMVRKHEVKA LMKLKHPARV DYLRQYIF
//
