GenomeNet

Database: UniProt
Entry: E1BA85_BOVIN
LinkDB: E1BA85_BOVIN
Original site: E1BA85_BOVIN 
ID   E1BA85_BOVIN            Unreviewed;       616 AA.
AC   E1BA85;
DT   02-NOV-2010, integrated into UniProtKB/TrEMBL.
DT   02-NOV-2010, sequence version 1.
DT   24-JAN-2024, entry version 79.
DE   SubName: Full=Autophagy related 16 like 2 {ECO:0000313|Ensembl:ENSBTAP00000025375.5};
GN   Name=ATG16L2 {ECO:0000313|Ensembl:ENSBTAP00000025375.5,
GN   ECO:0000313|VGNC:VGNC:26254};
OS   Bos taurus (Bovine).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
OX   NCBI_TaxID=9913 {ECO:0000313|Ensembl:ENSBTAP00000025375.5, ECO:0000313|Proteomes:UP000009136};
RN   [1] {ECO:0000313|Ensembl:ENSBTAP00000025375.5, ECO:0000313|Proteomes:UP000009136}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000025375.5,
RC   ECO:0000313|Proteomes:UP000009136};
RA   Rosen B.D., Bickhart D.M., Koren S., Schnabel R.D., Hall R., Zimin A.,
RA   Dreischer C., Schultheiss S., Schroeder S.G., Elsik C.G., Couldrey C.,
RA   Liu G.E., Van Tassell C.P., Phillippy A.M., Smith T.P.L., Medrano J.F.;
RT   "ARS-UCD1.2.";
RL   Submitted (MAR-2018) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSBTAP00000025375.5}
RP   IDENTIFICATION.
RC   STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000025375.5};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC       {ECO:0000256|ARBA:ARBA00009271}.
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DR   RefSeq; NP_001179209.1; NM_001192280.1.
DR   AlphaFoldDB; E1BA85; -.
DR   SMR; E1BA85; -.
DR   STRING; 9913.ENSBTAP00000025375; -.
DR   PaxDb; 9913-ENSBTAP00000025375; -.
DR   Ensembl; ENSBTAT00000025375.6; ENSBTAP00000025375.5; ENSBTAG00000019059.6.
DR   GeneID; 511036; -.
DR   KEGG; bta:511036; -.
DR   CTD; 89849; -.
DR   VEuPathDB; HostDB:ENSBTAG00000019059; -.
DR   VGNC; VGNC:26254; ATG16L2.
DR   eggNOG; KOG0288; Eukaryota.
DR   GeneTree; ENSGT00940000153936; -.
DR   HOGENOM; CLU_000288_57_10_1; -.
DR   InParanoid; E1BA85; -.
DR   OMA; PHCAAIN; -.
DR   OrthoDB; 458014at2759; -.
DR   TreeFam; TF315541; -.
DR   Proteomes; UP000009136; Chromosome 15.
DR   Bgee; ENSBTAG00000019059; Expressed in neutrophil and 104 other cell types or tissues.
DR   GO; GO:0000421; C:autophagosome membrane; IBA:GO_Central.
DR   GO; GO:0000045; P:autophagosome assembly; IBA:GO_Central.
DR   GO; GO:0039689; P:negative stranded viral RNA replication; IBA:GO_Central.
DR   CDD; cd22887; Atg16_CCD; 1.
DR   CDD; cd00200; WD40; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   InterPro; IPR045160; ATG16.
DR   InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR   PANTHER; PTHR19878:SF7; PROTEIN ATG16L2; 1.
DR   Pfam; PF08614; ATG16; 1.
DR   Pfam; PF00400; WD40; 6.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 7.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 2.
DR   PROSITE; PS50082; WD_REPEATS_2; 5.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Reference proteome {ECO:0000313|Proteomes:UP000009136};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}.
FT   DOMAIN          17..204
FT                   /note="Autophagy-related protein 16"
FT                   /evidence="ECO:0000259|Pfam:PF08614"
FT   REPEAT          329..362
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          373..414
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          415..448
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          553..582
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REPEAT          584..616
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   COILED          115..218
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   616 AA;  68514 MW;  47BBF439704344BE CRC64;
     MEGPGVLGAP AARWKRHIVR QLRQRDRTQK ALFLELVPAY NRLLEKAELL ARFSEELQPE
     PDDVTLSVHQ GPWEKESHQG LSPAALRVKW QEEVEGLRLV CGEMAYQVVE KSATLGTLES
     QLEERQSRLA ALKARVEQLE EVRAKKAGQV HARRALNEEQ RAAYEALRAR VGHQEAALRR
     LEEEARDLLE RLVQHKARAA AERNLRNERR ERAKQARVSQ ELKKAAKRTV SISESPDTLG
     DGIREEAETL VVAAKPGSLE SEAGEKWKRP FRSASATSLT MSRCVDVVKG LLDFKKRRGH
     SIGGAPEQRY QSIPVYVTTR LPTQAHDVLD AHLSEVSAVR FGPNSSLLAT GGADRLILLW
     NVVGGHLKAN QTLEGAGGSI TSVDFDPSGS QLLAATYNKA AQLWKVGEAQ SKETLSGHTD
     KVTAAKFKLT RHQAVTGSRD RTVKEWDLCR AYCSRTINVL SYCNDVVCGD HIIISGHNDQ
     KIRFWDSRGP RCTQVIPVQG RVTSLSLSHD QLHLLSCSRD DTLKVIDLRV SNIRQVFRAD
     GFKCGSDWTK AVFSPDRSYA LAGSWDGALY IWNVDTGKLE SSLRGPHSAA VNAVAWCYSG
     NHVVSVDQAR KVVLWH
//
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