ID E1BA85_BOVIN Unreviewed; 616 AA.
AC E1BA85;
DT 02-NOV-2010, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2010, sequence version 1.
DT 24-JAN-2024, entry version 79.
DE SubName: Full=Autophagy related 16 like 2 {ECO:0000313|Ensembl:ENSBTAP00000025375.5};
GN Name=ATG16L2 {ECO:0000313|Ensembl:ENSBTAP00000025375.5,
GN ECO:0000313|VGNC:VGNC:26254};
OS Bos taurus (Bovine).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC Bovinae; Bos.
OX NCBI_TaxID=9913 {ECO:0000313|Ensembl:ENSBTAP00000025375.5, ECO:0000313|Proteomes:UP000009136};
RN [1] {ECO:0000313|Ensembl:ENSBTAP00000025375.5, ECO:0000313|Proteomes:UP000009136}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000025375.5,
RC ECO:0000313|Proteomes:UP000009136};
RA Rosen B.D., Bickhart D.M., Koren S., Schnabel R.D., Hall R., Zimin A.,
RA Dreischer C., Schultheiss S., Schroeder S.G., Elsik C.G., Couldrey C.,
RA Liu G.E., Van Tassell C.P., Phillippy A.M., Smith T.P.L., Medrano J.F.;
RT "ARS-UCD1.2.";
RL Submitted (MAR-2018) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSBTAP00000025375.5}
RP IDENTIFICATION.
RC STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000025375.5};
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC {ECO:0000256|ARBA:ARBA00009271}.
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DR RefSeq; NP_001179209.1; NM_001192280.1.
DR AlphaFoldDB; E1BA85; -.
DR SMR; E1BA85; -.
DR STRING; 9913.ENSBTAP00000025375; -.
DR PaxDb; 9913-ENSBTAP00000025375; -.
DR Ensembl; ENSBTAT00000025375.6; ENSBTAP00000025375.5; ENSBTAG00000019059.6.
DR GeneID; 511036; -.
DR KEGG; bta:511036; -.
DR CTD; 89849; -.
DR VEuPathDB; HostDB:ENSBTAG00000019059; -.
DR VGNC; VGNC:26254; ATG16L2.
DR eggNOG; KOG0288; Eukaryota.
DR GeneTree; ENSGT00940000153936; -.
DR HOGENOM; CLU_000288_57_10_1; -.
DR InParanoid; E1BA85; -.
DR OMA; PHCAAIN; -.
DR OrthoDB; 458014at2759; -.
DR TreeFam; TF315541; -.
DR Proteomes; UP000009136; Chromosome 15.
DR Bgee; ENSBTAG00000019059; Expressed in neutrophil and 104 other cell types or tissues.
DR GO; GO:0000421; C:autophagosome membrane; IBA:GO_Central.
DR GO; GO:0000045; P:autophagosome assembly; IBA:GO_Central.
DR GO; GO:0039689; P:negative stranded viral RNA replication; IBA:GO_Central.
DR CDD; cd22887; Atg16_CCD; 1.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR045160; ATG16.
DR InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR PANTHER; PTHR19878:SF7; PROTEIN ATG16L2; 1.
DR Pfam; PF08614; ATG16; 1.
DR Pfam; PF00400; WD40; 6.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000009136};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 17..204
FT /note="Autophagy-related protein 16"
FT /evidence="ECO:0000259|Pfam:PF08614"
FT REPEAT 329..362
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 373..414
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 415..448
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 553..582
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 584..616
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT COILED 115..218
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 616 AA; 68514 MW; 47BBF439704344BE CRC64;
MEGPGVLGAP AARWKRHIVR QLRQRDRTQK ALFLELVPAY NRLLEKAELL ARFSEELQPE
PDDVTLSVHQ GPWEKESHQG LSPAALRVKW QEEVEGLRLV CGEMAYQVVE KSATLGTLES
QLEERQSRLA ALKARVEQLE EVRAKKAGQV HARRALNEEQ RAAYEALRAR VGHQEAALRR
LEEEARDLLE RLVQHKARAA AERNLRNERR ERAKQARVSQ ELKKAAKRTV SISESPDTLG
DGIREEAETL VVAAKPGSLE SEAGEKWKRP FRSASATSLT MSRCVDVVKG LLDFKKRRGH
SIGGAPEQRY QSIPVYVTTR LPTQAHDVLD AHLSEVSAVR FGPNSSLLAT GGADRLILLW
NVVGGHLKAN QTLEGAGGSI TSVDFDPSGS QLLAATYNKA AQLWKVGEAQ SKETLSGHTD
KVTAAKFKLT RHQAVTGSRD RTVKEWDLCR AYCSRTINVL SYCNDVVCGD HIIISGHNDQ
KIRFWDSRGP RCTQVIPVQG RVTSLSLSHD QLHLLSCSRD DTLKVIDLRV SNIRQVFRAD
GFKCGSDWTK AVFSPDRSYA LAGSWDGALY IWNVDTGKLE SSLRGPHSAA VNAVAWCYSG
NHVVSVDQAR KVVLWH
//