ID E2IZN3_9VIRU Unreviewed; 281 AA.
AC E2IZN3;
DT 30-NOV-2010, integrated into UniProtKB/TrEMBL.
DT 30-NOV-2010, sequence version 1.
DT 24-JAN-2024, entry version 40.
DE RecName: Full=Capsid protein {ECO:0000256|ARBA:ARBA00018091};
GN Name=CP {ECO:0000313|EMBL:AFN89802.1};
OS Velvet tobacco mottle virus.
OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC Sobelivirales; Solemoviridae; Sobemovirus.
OX NCBI_TaxID=12473 {ECO:0000313|EMBL:ADN19016.1, ECO:0000313|Proteomes:UP000202555};
RN [1] {ECO:0000313|EMBL:ADN19016.1, ECO:0000313|Proteomes:UP000202555}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K1 {ECO:0000313|EMBL:ADN19016.1,
RC ECO:0000313|Proteomes:UP000202555};
RX PubMed=20857308; DOI=10.1007/s00705-010-0801-2;
RA Arthur K., Dogra S., Randles J.W.;
RT "Complete nucleotide sequence of Velvet tobacco mottle virus isolate K1.";
RL Arch. Virol. 155:1893-1896(2010).
RN [2] {ECO:0000313|EMBL:AEE36646.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=R17 {ECO:0000313|EMBL:AEE36646.1};
RA Arthur K.R., Randles J.W.;
RL Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AFN89802.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=VTMoV-K1 {ECO:0000313|EMBL:AFN89802.1}, and VTMoV-R17
RC {ECO:0000313|EMBL:AFN89808.1};
RX PubMed=22983896; DOI=10.1007/s11262-012-0801-2;
RA Arthur K., Collins N.C., Randles J.W.;
RT "Mutation rate in Velvet tobacco mottle virus varies between genomic region
RT and virus variant but is not influenced by obligatory mirid transmission.";
RL Virus Genes 45:575-580(2012).
RN [4] {ECO:0000313|EMBL:AFN89802.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=VTMoV-K1 {ECO:0000313|EMBL:AFN89802.1}, and VTMoV-R17
RC {ECO:0000313|EMBL:AFN89808.1};
RA Arthur K.R., Collins N.C., Randles J.W.;
RL Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:ADN19016.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=K1 {ECO:0000313|EMBL:ADN19016.1};
RA Arthur K.R., Dogra S., Randles J.W.;
RL Submitted (APR-2012) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:AEE36646.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=R17 {ECO:0000313|EMBL:AEE36646.1};
RX PubMed=24233651; DOI=10.1007/s11262-013-1007-y;
RA Arthur K., Collins N., Yazarlou A., Randles J.;
RT "Nucleotide sequence diversity in Velvet tobacco mottle virus: a virus with
RT a unique Australian pathosystem.";
RL Virus Genes 48:168-173(2014).
CC -!- SIMILARITY: Belongs to the icosahedral plant coat protein family.
CC {ECO:0000256|ARBA:ARBA00007446}.
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DR EMBL; HM754263; ADN19016.1; -; Genomic_RNA.
DR EMBL; HQ680399; AEE36646.1; -; Genomic_RNA.
DR EMBL; JQ968540; AFN89802.1; -; Genomic_RNA.
DR EMBL; JQ968541; AFN89804.1; -; Genomic_RNA.
DR EMBL; JQ968543; AFN89808.1; -; Genomic_RNA.
DR EMBL; JQ968544; AFN89810.1; -; Genomic_RNA.
DR EMBL; JQ968545; AFN89812.1; -; Genomic_RNA.
DR RefSeq; YP_003896040.1; NC_014509.2.
DR SMR; E2IZN3; -.
DR GeneID; 9742357; -.
DR KEGG; vg:9742357; -.
DR OrthoDB; 9667at10239; -.
DR Proteomes; UP000202555; Genome.
DR GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 2.60.120.20; -; 1.
DR InterPro; IPR000937; Capsid_prot_S-dom_vir.
DR InterPro; IPR029053; Viral_coat.
DR Pfam; PF00729; Viral_coat; 1.
DR PRINTS; PR00233; ICOSAHEDRAL.
DR SUPFAM; SSF88633; Positive stranded ssRNA viruses; 1.
DR PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1.
PE 3: Inferred from homology;
KW Capsid protein {ECO:0000313|EMBL:ADN19016.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000202555};
KW Virion {ECO:0000313|EMBL:ADN19016.1}.
FT DOMAIN 43..247
FT /note="Icosahedral viral capsid protein S"
FT /evidence="ECO:0000259|Pfam:PF00729"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 6..22
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 281 AA; 30732 MW; E96B623334404411 CRC64;
MSKKLTKNQV KQMIQATLPK EQTSARSRRR RRRRSTQQGQ SSTVMAPMAG AVIYRKRPML
INGRSGVTVR HSEVVLVVQS GTTNFSATSV TLAPNTFTWL AVQGSLYSKW RWISLRATYV
PETASTTPGT VAMGFQYDNT DVLPTGTAGM SSLHGFVSGA PWSGFSGSKL LAESPTTPIP
AGAIATRLDC QNFGLKWYQY KSVIPAGDSG NIYIPAQLIV GTLGTGSTLR YGEVHIQYEI
EFIEPLPPSV NTLRDIYSRM ILSSASDERK GEKSSQTLTD R
//