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Database: UniProt
Entry: E6V001_VARPE
LinkDB: E6V001_VARPE
Original site: E6V001_VARPE 
ID   E6V001_VARPE            Unreviewed;       309 AA.
AC   E6V001;
DT   08-MAR-2011, integrated into UniProtKB/TrEMBL.
DT   08-MAR-2011, sequence version 1.
DT   24-JAN-2024, entry version 64.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU40110.1};
GN   OrderedLocusNames=Varpa_5958 {ECO:0000313|EMBL:ADU40110.1};
OS   Variovorax paradoxus (strain EPS).
OC   Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=595537 {ECO:0000313|EMBL:ADU40110.1, ECO:0000313|Proteomes:UP000008917};
RN   [1] {ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|Proteomes:UP000008917};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA   Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N.,
RA   Ivanova N., Ovchinnikova G., Orwin P., Han J.-I.G., Woyke T.;
RT   "Complete sequence of Variovorax paradoxus EPS.";
RL   Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ADU40110.1, ECO:0000313|Proteomes:UP000008917}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=EPS {ECO:0000313|EMBL:ADU40110.1,
RC   ECO:0000313|Proteomes:UP000008917};
RX   PubMed=24158554;
RA   Han J.I., Spain J.C., Leadbetter J.R., Ovchinnikova G., Goodwin L.A.,
RA   Han C.S., Woyke T., Davenport K.W., Orwin P.M.;
RT   "Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax
RT   paradoxus Strain EPS.";
RL   Genome Announc. 1:e00843-e00813(2013).
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|ARBA:ARBA00009437}.
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DR   EMBL; CP002417; ADU40110.1; -; Genomic_DNA.
DR   RefSeq; WP_013544302.1; NC_014931.1.
DR   AlphaFoldDB; E6V001; -.
DR   STRING; 595537.Varpa_5958; -.
DR   KEGG; vpe:Varpa_5958; -.
DR   eggNOG; COG0583; Bacteria.
DR   HOGENOM; CLU_039613_16_2_4; -.
DR   OMA; DITQTND; -.
DR   OrthoDB; 116299at2; -.
DR   Proteomes; UP000008917; Chromosome.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   CDD; cd08422; PBP2_CrgA_like; 1.
DR   Gene3D; 3.40.190.290; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   PANTHER; PTHR30537; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR   PANTHER; PTHR30537:SF71; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR   SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
FT   DOMAIN          2..59
FT                   /note="HTH lysR-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50931"
SQ   SEQUENCE   309 AA;  33187 MW;  85BC60E7D831D10A CRC64;
     MLDLNHIAMF VQVVRHGSFA EAGRRLGLPP NTVSRRIQEL EAQLGTRLMQ RSTRKLTLTS
     AGQAFHERCA GSVDGLVEAG QALITGSQEP SGLVRVAATA DFFDFFPMEW VAEFLAANPL
     VRVDFVLSDA KADLIADQID VAFRGGELPD TGYVGRKLLG PRTDGLVASP AYIAARGAPA
     TLRDLTDHDC VTAAHPSGRA TWRMTGPDGV EEEVQVSGRF SGNTAQALRR AAVAGLGIAL
     LPPSMGRLDV EAGRLVPVLP QYQRTGQGLS VLYPSRKHLP LAVSAFIGMV MERLSTEETL
     PAAFKSWKT
//
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