ID F0IFE9_9FLAO Unreviewed; 385 AA.
AC F0IFE9;
DT 03-MAY-2011, integrated into UniProtKB/TrEMBL.
DT 03-MAY-2011, sequence version 1.
DT 24-JAN-2024, entry version 46.
DE SubName: Full=N6-adenine-specific DNA methylase {ECO:0000313|EMBL:EGD34304.1};
GN ORFNames=HMPREF9071_1239 {ECO:0000313|EMBL:EGD34304.1};
OS Capnocytophaga sp. oral taxon 338 str. F0234.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Capnocytophaga.
OX NCBI_TaxID=888059 {ECO:0000313|EMBL:EGD34304.1, ECO:0000313|Proteomes:UP000003023};
RN [1] {ECO:0000313|EMBL:EGD34304.1, ECO:0000313|Proteomes:UP000003023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=F0234 {ECO:0000313|EMBL:EGD34304.1,
RC ECO:0000313|Proteomes:UP000003023};
RA Muzny D., Qin X., Deng J., Jiang H., Liu Y., Qu J., Song X.-Z., Zhang L.,
RA Thornton R., Coyle M., Francisco L., Jackson L., Javaid M., Korchina V.,
RA Kovar C., Mata R., Mathew T., Ngo R., Nguyen L., Nguyen N., Okwuonu G.,
RA Ongeri F., Pham C., Simmons D., Wilczek-Boney K., Hale W., Jakkamsetti A.,
RA Pham P., Ruth R., San Lucas F., Warren J., Zhang J., Zhao Z., Zhou C.,
RA Zhu D., Lee S., Bess C., Blankenburg K., Forbes L., Fu Q., Gubbala S.,
RA Hirani K., Jayaseelan J.C., Lara F., Munidasa M., Palculict T., Patil S.,
RA Pu L.-L., Saada N., Tang L., Weissenberger G., Zhu Y., Hemphill L.,
RA Shang Y., Youmans B., Ayvaz T., Ross M., Santibanez J., Aqrawi P.,
RA Gross S., Joshi V., Fowler G., Nazareth L., Reid J., Worley K.,
RA Petrosino J., Highlander S., Gibbs R.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGD34304.1}.
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DR EMBL; AEXX01000028; EGD34304.1; -; Genomic_DNA.
DR AlphaFoldDB; F0IFE9; -.
DR STRING; 888059.HMPREF9071_1239; -.
DR eggNOG; COG0116; Bacteria.
DR HOGENOM; CLU_032119_3_0_10; -.
DR Proteomes; UP000003023; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:InterPro.
DR GO; GO:0034470; P:ncRNA processing; IEA:UniProt.
DR GO; GO:0001510; P:RNA methylation; IEA:UniProt.
DR CDD; cd11715; THUMP_AdoMetMT; 1.
DR Gene3D; 3.30.2130.30; -; 1.
DR Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR InterPro; IPR000241; RlmKL-like_Mtase.
DR InterPro; IPR029063; SAM-dependent_MTases_sf.
DR InterPro; IPR004114; THUMP_dom.
DR PANTHER; PTHR47313; RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE K/L; 1.
DR PANTHER; PTHR47313:SF1; RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE K/L; 1.
DR Pfam; PF02926; THUMP; 1.
DR Pfam; PF01170; UPF0020; 1.
DR SMART; SM00981; THUMP; 1.
DR SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
DR PROSITE; PS51165; THUMP; 1.
PE 4: Predicted;
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603,
KW ECO:0000313|EMBL:EGD34304.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000003023};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00529};
KW Transferase {ECO:0000256|ARBA:ARBA00022603, ECO:0000313|EMBL:EGD34304.1}.
FT DOMAIN 45..157
FT /note="THUMP"
FT /evidence="ECO:0000259|PROSITE:PS51165"
SQ SEQUENCE 385 AA; 44463 MW; 5ABB7E138F0865D2 CRC64;
MENYAMVAKT FFGFEDILEE ELRQLGAMKI EKGIRSVSFL GDKGFMYKAN LCLRTALKIL
KPIHSFYVRN EKEYYQALYE YPWEGLFTPS QTFAVEVTLA SDLFHHSQYM TLRAKDAIVD
RFRNKTGKRP NIDTLHPDIQ LFIHIQKENK VIVSLDTSGA SLHHRGYRTQ TNIAPINEVL
AAGILLLSGW QGQCDFLDPM CGSGTFLTEG AMIACNIPAN LHRKEFAFEK WEDYDVDLFE
TIFDSCLNKA KEFPYQIMGY DKAPSAVNKA KENVKNARLS DYIAIEQHDF FKTQKQTERP
LFMAFNPPYG ERLEVDAPTF YKQIGDTLKQ QYPNTQTWFI TSNLEALKWV GLRPSHKIKL
FNGKLESRLV NYNIYEGSKK QKKNS
//