ID F3AVU5_9FIRM Unreviewed; 424 AA.
AC F3AVU5;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 24-JAN-2024, entry version 58.
DE RecName: Full=Diaminopimelate decarboxylase {ECO:0008006|Google:ProtNLM};
GN ORFNames=HMPREF1025_01849 {ECO:0000313|EMBL:EGG84964.1};
OS Lachnospiraceae bacterium 3_1_46FAA.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Lachnospiraceae.
OX NCBI_TaxID=665950 {ECO:0000313|EMBL:EGG84964.1, ECO:0000313|Proteomes:UP000005376};
RN [1] {ECO:0000313|EMBL:EGG84964.1, ECO:0000313|Proteomes:UP000005376}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=3_1_46FAA {ECO:0000313|EMBL:EGG84964.1,
RC ECO:0000313|Proteomes:UP000005376};
RG The Broad Institute Genome Sequencing Platform;
RA Earl A., Ward D., Feldgarden M., Gevers D., Daigneault M., Strauss J.,
RA Ambrose C., Allen-Vercoe E., Young S.K., Zeng Q., Gargeya S.,
RA Fitzgerald M., Haas B., Abouelleil A., Alvarado L., Arachchi H.M.,
RA Berlin A., Brown A., Chapman S.B., Chen Z., Dunbar C., Freedman E.,
RA Gearin G., Gellesch M., Goldberg J., Griggs A., Gujja S., Heilman E.R.,
RA Heiman D., Howarth C., Larson L., Lui A., MacDonald P.J.P., Mehta T.,
RA Montmayeur A., Murphy C., Neiman D., Pearson M., Priest M., Roberts A.,
RA Saif S., Shea T., Shenoy N., Sisk P., Stolte C., Sykes S., White J.,
RA Yandava C., Wortman J., Nusbaum C., Birren B.;
RT "The Genome Sequence of Lachnospiraceae bacterium 3_1_46FAA.";
RL Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|PIRSR:PIRSR600183-50};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC {ECO:0000256|RuleBase:RU003737}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EGG84964.1}.
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DR EMBL; ACWP01000036; EGG84964.1; -; Genomic_DNA.
DR AlphaFoldDB; F3AVU5; -.
DR eggNOG; COG0019; Bacteria.
DR HOGENOM; CLU_026444_0_2_9; -.
DR OrthoDB; 9802241at2; -.
DR Proteomes; UP000005376; Unassembled WGS sequence.
DR GO; GO:0008836; F:diaminopimelate decarboxylase activity; IEA:InterPro.
DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:InterPro.
DR CDD; cd06828; PLPDE_III_DapDC; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR002986; DAP_deCOOHase_LysA.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01181; DAPDCRBXLASE.
DR PRINTS; PR01179; ODADCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR600183-50}.
FT DOMAIN 31..279
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 281..369
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
FT ACT_SITE 342
FT /note="Proton donor"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
FT MOD_RES 55
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR600183-50"
SQ SEQUENCE 424 AA; 47594 MW; 04E338DA3CA02D27 CRC64;
MDKRPFVTKE KVEKITKIYP TPFHLYDEKG IRENVKALKE AFSWNKGYKE YFAVKATPNP
FLIDILKEYG CGCDCSSYTE LMMSEALEIT GEDIMFSSND TPAEEFIYAD KLGAIINLDD
ITHIDFLEQA IGHVPETISC RFNPGGLFKI SNDIMDNPGD AKYGMTPEQI LEAYKILKSK
GAKEFGLHAF LASNTVTNDY YPMLAKVLFE QAVKLSKEAG VHIKFINLSG GIGIPYKPDQ
EPNDIYAIGE GVRKVYEEVL VPAGMGDVAI YTELGRYMMG PYGCLVTKAI HEKNTYKNYI
GVDACAVNLM RPAMYGAYHH ITVLGKEDEP CDHKYDVTGS LCENNDKFAV DRMLPLIERG
DYLVIHDTGA HGFAMGYNYN GKLKSAELLL KENGEVKLIR RAETPADYFS TFDCFEIGKK
LMNV
//
