ID F4J5W3_ARATH Unreviewed; 406 AA.
AC F4J5W3;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 13-SEP-2023, entry version 58.
DE SubName: Full=Ubiquitin carboxyl-terminal hydrolase family protein {ECO:0000313|EMBL:AEE79795.1};
GN OrderedLocusNames=At3g58520 {ECO:0000313|Araport:AT3G58520,
GN ECO:0000313|EMBL:AEE79795.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AEE79795.1, ECO:0000313|Proteomes:UP000006548};
RN [1] {ECO:0000313|EMBL:AEE79795.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130713; DOI=10.1038/35048706;
RG European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG Institute for Genomic Research;
RG Kazusa DNA Research Institute;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; CP002686; AEE79795.1; -; Genomic_DNA.
DR RefSeq; NP_001154682.1; NM_001161210.1.
DR AlphaFoldDB; F4J5W3; -.
DR ProteomicsDB; 201693; -.
DR EnsemblPlants; AT3G58520.2; AT3G58520.2; AT3G58520.
DR GeneID; 825021; -.
DR Gramene; AT3G58520.2; AT3G58520.2; AT3G58520.
DR KEGG; ath:AT3G58520; -.
DR Araport; AT3G58520; -.
DR TAIR; AT3G58520; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; F4J5W3; baseline and differential.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR InterPro; IPR021099; PORR_domain.
DR InterPro; IPR045040; PORR_fam.
DR PANTHER; PTHR31476:SF10; OS04G0546100 PROTEIN; 1.
DR PANTHER; PTHR31476; PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC; 1.
DR Pfam; PF11955; PORR; 1.
PE 1: Evidence at protein level;
KW Hydrolase {ECO:0000313|EMBL:AEE79795.1};
KW Proteomics identification {ECO:0007829|PeptideAtlas:F4J5W3,
KW ECO:0007829|ProteomicsDB:F4J5W3};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548}.
FT DOMAIN 36..358
FT /note="PORR"
FT /evidence="ECO:0000259|Pfam:PF11955"
FT REGION 377..406
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 378..406
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 406 AA; 47650 MW; 9B29DA914EA04367 CRC64;
MFVKSQSFLF SVSKLFHQHQ QWRGMGAMTK VRLKWVKNKN LDHVIDTETD LKAACILKDA
IKRSPTGITI RENFNCYWNK RYPTLFHEFP HARYASLPCF KLTDTALMLD SQEEIIHQSH
EADTVERLCR VLMMMRSKTV SLRSLHSLKF DLGLPDNYEK TLVMKYPDHF CFVKASNGNP
CLKLVKWRDE FAFSALQKRN EDNDVSGEES RYREFKRGQS TLTFPMSFPR GYGAQKKVKA
WMDEFQKLPY ISPYDDPSNI DPESDLMEKR AVAVLHELLS LTIHKKTKRN YLRSMRAELN
IPHKFTRLFT RYPGIFYLSL KCKTTTVILK EGYRRGKLVD PHPLTRLRDK FYHVMRTGFL
YRARGLGMVS KEELLLDRPE DDLEEEGSEE EEIVEGSELE EDSEAE
//