ID F4PDE7_BATDJ Unreviewed; 812 AA.
AC F4PDE7;
DT 28-JUN-2011, integrated into UniProtKB/TrEMBL.
DT 28-JUN-2011, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE RecName: Full=Mitochondrial group I intron splicing factor CCM1 {ECO:0000256|ARBA:ARBA00019650};
GN ORFNames=BATDEDRAFT_92412 {ECO:0000313|EMBL:EGF76780.1};
OS Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog chytrid
OS fungus).
OC Eukaryota; Fungi; Fungi incertae sedis; Chytridiomycota;
OC Chytridiomycota incertae sedis; Chytridiomycetes; Rhizophydiales;
OC Rhizophydiales incertae sedis; Batrachochytrium.
OX NCBI_TaxID=684364 {ECO:0000313|EMBL:EGF76780.1, ECO:0000313|Proteomes:UP000007241};
RN [1] {ECO:0000313|EMBL:EGF76780.1, ECO:0000313|Proteomes:UP000007241}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JAM81 / FGSC 10211 {ECO:0000313|Proteomes:UP000007241};
RG US DOE Joint Genome Institute (JGI-PGF);
RA Kuo A., Salamov A., Schmutz J., Lucas S., Pitluck S., Rosenblum E.,
RA Stajich J., Eisen M., Grigoriev I.V.;
RT "The draft genome of Batrachochytrium dendrobatidis.";
RL Submitted (DEC-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: RNA-binding protein involved in the specific removal of group
CC I introns in mitochondrial encoded transcripts. Maintains the stability
CC of the small subunit mitochondrial 15S rRNA and thus the expression of
CC the mitochondrial genome. {ECO:0000256|ARBA:ARBA00024866}.
CC -!- SIMILARITY: Belongs to the CCM1 family.
CC {ECO:0000256|ARBA:ARBA00006192}.
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DR EMBL; GL882895; EGF76780.1; -; Genomic_DNA.
DR RefSeq; XP_006682725.1; XM_006682662.1.
DR AlphaFoldDB; F4PDE7; -.
DR STRING; 684364.F4PDE7; -.
DR GeneID; 18244617; -.
DR HOGENOM; CLU_347477_0_0_1; -.
DR InParanoid; F4PDE7; -.
DR OMA; NAICDQG; -.
DR OrthoDB; 1381922at2759; -.
DR Proteomes; UP000007241; Unassembled WGS sequence.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR47934:SF6; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1-RELATED; 1.
DR PANTHER; PTHR47934; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 3.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000007241}.
FT REPEAT 485..519
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 520..554
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 701..735
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 812 AA; 93169 MW; 74D45F3E72DA3F9D CRC64;
MSRRSYYIPP DDFSKEFGPD SSADLNVSES HELKNLQHII STYEHIYTTL SAKKRQSAAL
QVASAYDKAY ITSNDKSLNL DWKEYKCLLQ IVPLARSPRL NHHNLTRVLV QDLIHSNVVF
TLDRFNFSLR ALHDHPSGVF LYKLLIKRLH VDDANGIWKD DIYWHLLKIH VFCDGPSFAE
DWIRQLMSIS DQNTLEKLDS SIIPKKPLKW NKSLYHCLAL GYARQGDVER ASVLISDMAQ
GGYPYISCVE HSIRALCRIE KVDEAFTLYQ QYRYSDHQPS IKLFENMIWG ILVVQFRAAF
HGKRYSRIDI PLDERHLVPK FDPNTTIDIA NRIMVDLSKA GYIPSVLTVG LYLTHFMIYG
KYNQVIDLYD AMTRQDMKWD IISLTVMLKV FFSCKNTDRA TEIISLYDQC GFDRDVVFYG
TLMDGYHIIG DTNKSLEYYR EFLGTSCTPN QNIYHIALSI YGTRLDMQSA ERIWSEMEQH
AIPYTEMSYS IMIHGYGLCG DLYQANAVFN SMMSANVVMT EASYNTLMNA HINNREYNEA
EKIYERMINS DIQPDIYSFN ILLKSHLIQL KVAHTNVVLR DMQKSGVDPT SHTYITLIQL
YTSTGHMDEA LRVHQVLKDL PIYNEQGSDV PLIARSAFLN QYSLINNWEA FEGQIELVKK
EGIAFTSLLH ESIVMGYYRR GGLDDALVWY REALDSGCEL KTRFFNRVIH FCIDSGHATN
AIQVANDMLQ RGVKPDIFTY TWLLRAGIVL SDTGIASIPA ASKSVKPLDD QKDESFFDSS
NASKDGLTVS KPIDFDAFDF DFEDDSKGLP NA
//