ID F5Z6D1_ALTNA Unreviewed; 533 AA.
AC F5Z6D1;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 59.
DE RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
GN OrderedLocusNames=ambt_19765 {ECO:0000313|EMBL:AEF05444.1};
OS Alteromonas naphthalenivorans.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Alteromonadaceae; Alteromonas/Salinimonas group; Alteromonas.
OX NCBI_TaxID=715451 {ECO:0000313|EMBL:AEF05444.1, ECO:0000313|Proteomes:UP000000683};
RN [1] {ECO:0000313|EMBL:AEF05444.1, ECO:0000313|Proteomes:UP000000683}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 17741 / KACC 18427 / KCTC 11700BP / SN2
RC {ECO:0000313|Proteomes:UP000000683};
RX PubMed=21705606; DOI=10.1128/JB.05252-11;
RA Jin H.M., Jeong H., Moon E.J., Math R.K., Lee K., Kim H.J., Jeon C.O.,
RA Oh T.K., Kim J.F.;
RT "Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading
RT bacterium Alteromonas sp. strain SN2.";
RL J. Bacteriol. 193:4292-4293(2011).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
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DR EMBL; CP002339; AEF05444.1; -; Genomic_DNA.
DR RefSeq; WP_013786354.1; NC_015554.1.
DR AlphaFoldDB; F5Z6D1; -.
DR KEGG; alt:ambt_19765; -.
DR eggNOG; COG1793; Bacteria.
DR HOGENOM; CLU_005138_6_2_6; -.
DR OrthoDB; 9767858at2; -.
DR Proteomes; UP000000683; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR CDD; cd07972; OBF_DNA_ligase_Arch_LigB; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR026333; ATP_dep_DNA_lig_pp_1105_fam.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR NCBIfam; TIGR04120; DNA_lig_bact; 1.
DR PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR PANTHER; PTHR45674:SF13; DNA LIGASE-RELATED; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS00697; DNA_LIGASE_A1; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 4: Predicted;
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:AEF05444.1}.
FT DOMAIN 311..439
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
SQ SEQUENCE 533 AA; 60260 MW; B56A45B5561C28C5 CRC64;
MQAFSDLLEQ LYYTAGTKAK AQLILHYLAT TPDPDRGWAI AAMAGTLKFD FFKRNTVKKL
ITERVDPELF AMSYDYVGEV SETVAHLWPE FTPDKALPSL SEVVDTFANI SKPKVAVTLA
NYLTIMTPSQ RWALLKLGTR GLRIGVSARS IKQILAEYGN KDITEIEKLW HGVAPPYTDL
LEWLEGNGSK PDISNAVTFH PVMLSHPIAQ DDVDDFAPEQ WQIEHKFDGI RVQLVCNTTK
EEPEKALFSR TGDDISHAFP DLLDSVSGNM VLDGELLVMH NQEVDTFNAL QQRLNKKKPT
AALMATNPAG LIVYDALVLD GKQLTDYPLT TRREALETWF DKNGIQEHDN DSRLHLSECL
SADSPKGLRT LHKNVCKNRA VEGLMIKRLS SPYVPGRPKG QWYKWKRDPL VVDAVMMYAQ
RGHGKRSSFY SDYTFGAWQD EQLLPIGNAY SGFTDEELKK LDNWVRRNAI GRFGPVREVK
KELVLEVAFD AVHPSNRHKS GVALRFPRIH RIRWDKPANE ADTLINVKAL IES
//
