ID F6GWS8_VITVI Unreviewed; 647 AA.
AC F6GWS8;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN OrderedLocusNames=VIT_04s0023g02490 {ECO:0000313|EMBL:CCB44413.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB44413.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; FN594959; CCB44413.1; -; Genomic_DNA.
DR RefSeq; XP_002268784.1; XM_002268748.3.
DR AlphaFoldDB; F6GWS8; -.
DR STRING; 29760.F6GWS8; -.
DR PaxDb; 29760-VIT_04s0023g02490-t01; -.
DR EnsemblPlants; Vitvi04g01369_t001; Vitvi04g01369_P001; Vitvi04g01369.
DR Gramene; Vitvi04g01369_t001; Vitvi04g01369_P001; Vitvi04g01369.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_1_1; -.
DR InParanoid; F6GWS8; -.
DR OrthoDB; 402590at2759; -.
DR Proteomes; UP000009183; Chromosome 4.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR24015:SF1653; OS06G0694300 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 2.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 103..137
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 205..235
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 236..270
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 308..338
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 339..373
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 555..647
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 647 AA; 71932 MW; 7D475C78F87E95FA CRC64;
MVKFCTKTCL FILPKTSYCQ LQTQSFIPFS VRQEQKILES RLVSVLHGCT HINQVKQVHA
HIFRKGLEQC CFVLAKLLRT LTKLDVPMDP YPRLVFQQVE YPNPFLWTAL IRGYALQGPF
MESVLLYNSM RRQGIGPVSF TFTALLKACS AALDVNLGRQ VHTQTILIGG FGSDLYVGNT
LIDMYVKCGC LGCGHRVFDE MLDRDVISWT SLIVAYAKVG NMEAASELFD GLPMKDMVAW
TAMVTGYAQN ARPREALEVF ERMQAAGVKT DEVTLVGVIS ACAQLGAAKY ANWVRDVAEQ
SGFGPTSNVV VGSALIDMYA KCGSVEDAYK VFERMEERNV YSYSSMIVGF AMHGLAGAAM
ELFDEMLKTE IKPNRVTFIG VLTACSHAGM VEQGQQLFAM MEECHGVAPS EDHYACMVDL
LGRAGRLEEA LNLVKMMPMN PHGGVWGALL GACRIHGNPD MAQIAASHLF ELEPNGIGNY
ILLSNIYASA GRWDDVSKVR KLMRAKGLKK NPGCSWVEGK KGIIHEFFAG DMSHPKSREI
KQALEDLLDR LKYLGYQPNL SSVAYDISDE EKKRLLMSHS EKLALAFGLL TTNAGCTIRI
VKNLRICEDC HSVMCGASQI TGREIVVRDN MRFHHFRDGR CSCGNFW
//
