ID F6H9I8_VITVI Unreviewed; 624 AA.
AC F6H9I8;
DT 27-JUL-2011, integrated into UniProtKB/TrEMBL.
DT 27-JUL-2011, sequence version 1.
DT 24-JAN-2024, entry version 64.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN OrderedLocusNames=VIT_04s0069g00930 {ECO:0000313|EMBL:CCB48881.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CCB48881.1, ECO:0000313|Proteomes:UP000009183};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; FN595500; CCB48881.1; -; Genomic_DNA.
DR RefSeq; XP_002263755.1; XM_002263719.3.
DR RefSeq; XP_019075151.1; XM_019219606.1.
DR AlphaFoldDB; F6H9I8; -.
DR PaxDb; 29760-VIT_04s0069g00930-t01; -.
DR GeneID; 100254802; -.
DR KEGG; vvi:100254802; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR InParanoid; F6H9I8; -.
DR OrthoDB; 350857at2759; -.
DR Proteomes; UP000009183; Chromosome 4.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR046960; PPR_At4g14850-like_plant.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 4.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000009183};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 185..215
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 216..250
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 286..316
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 317..351
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 532..624
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 624 AA; 70105 MW; 8F58FAEC268485A6 CRC64;
MSSLQLLQAS PPSLSSAKAH KLPLYGLDSC STMAELKQYH SQIIRLGLSA DNDAMGRVIK
FCAISKSGDL NYALEVFDKI PHPDAYIYNT IFRGYLRWQL ARNCIFMYSR MLHKSVSPNK
FTYPPLIRAC CIDYAIEEGK QIHAHVLKFG FGADGFSLNN LIHMYVNFQS LEQARRVFDN
MPQRDVVSWT SLITGYSQWG FVDKAREVFE LMPERNSVSW NAMIAAYVQS NRLHEAFALF
DRMRLENVVL DKFVAASMLS ACTGLGALEQ GKWIHGYIEK SGIELDSKLA TTVIDMYCKC
GCLEKASEVF NELPQKGISS WNCMIGGLAM HGKGEAAIEL FKEMEREMVA PDGITFVNVL
SACAHSGLVE EGKHYFQYMT EVLGLKPGME HFGCMVDLLG RAGLLEEARK LINEMPVNPD
AGVLGALVGA CRIHGNTELG EQIGKKVIEL EPHNSGRYVL LANLYASAGR WEDVAKVRKL
MNDRGVKKAP GFSMIESESG VDEFIAGGRA HPQAKEIYAK LDEILETIRS IGYVPDTDGV
LHDIDEEEKE NPLYYHSEKL AIAFGLLKTK PGETLRISKN LRICRDCHQA SKLISKVYDR
EIIIRDRNRF HHFRMGGCSC KDYW
//